GBrowse Details

Vigan.06G261900.01

Basic Information:
Name: Vigan.06G261900.01
Multiple alignment
Variant Information
Position: Chr06:38180099..38184495 (- strand)
Length: 4397
Functional Information:
Description: Similar to Uncharacterized protein. [I1LNY8, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: methyltransferase activity (GO:0008168)
InterPro: Methyltransferase type 11 (IPR013216)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.62,19.13,6.61,30.04,12.91,10.54,9.92,13.55
Arabidopsis thaliana homolog: AT3G60910.1
Automatic updates:
Name: NM_001248150 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527880 (LOC100527880), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:38180099..38180488 (- strand)
Length: 390
Type: three_prime_UTR
Position: Chr06:38180489..38180694 (- strand)
Length: 206
Type: CDS
Position: Chr06:38181345..38181426 (- strand)
Length: 82
Type: CDS
Position: Chr06:38181836..38181866 (- strand)
Length: 31
Type: CDS
Position: Chr06:38181977..38182029 (- strand)
Length: 53
Type: CDS
Position: Chr06:38182178..38182197 (- strand)
Length: 20
Type: CDS
Position: Chr06:38182337..38182405 (- strand)
Length: 69
Type: CDS
Position: Chr06:38182514..38182627 (- strand)
Length: 114
Type: CDS
Position: Chr06:38184113..38184296 (- strand)
Length: 184
Type: CDS
Position: Chr06:38184297..38184495 (- strand)
Length: 199
Type: five_prime_UTR


>Vigan.06G261900.01
TTTTTGAAGT CTCATTTCTA TATATAGTTT AAAAATAAAA AAAATAAAAA AAAATAAAAA GAAGAAAATC TGGTTTTGTC
GCCGCCGTGT TCCATTCCCA CCACACAGTC TCACGCACCA ACCAACCACT ATAACCGATT TCTCAGTCAC TCACTCACAC
GCGCTCACTG TTCGAACTGC AGAAAGATAA GATTGGAAGA TGTATAGGGA TGTGTCTAGC TGCAACACCT ACAACTACGG
CGACGCGCTG TATTGGGACG CGCGCTACAT CCAAGAGGGT GGTTCCTTCG ATTGGTACCA GCGTTATTCT GCTCTCAGAC
CGTTCGTGCG CAATTTCATC CCTCTTTCTT CAAGGATTCT CATGGTTGGT TGCGGCAATG CTGTTATGTC CGAGGATATG
GTCAAAGATG GTTATGAGCA CATCACAAAT ATTGATATTT CATCAGTTGC GATTGAGATG ATGAGAAGAA AATATGAGTA
CATACCTCAG CTAAAATACT TGCAGATGGA TGTCAGGGAT ATGAGCCTTT TTCCAGATGA ATCTTTTGAC GGTGTTATTG
ATAAAGGAAC TCTCGATTCA TTGATGTGTG GTACTGATGC TCCAATTAGT GCTTCTCAGA TGCTTGCAGA AGTGTGTAGA
CTTCTAAAAC CTGGAGGGAC TTATATTTTG ATCACGTATG GCGATCCAAC AGTAAGGATG CCTCATCTAA GCAGACCCGT
GTTCAATTGG AAAATTATGT TGTATAATAT CCCAAGACCT GGATTTCAAA AGCCCGAAAG TAGTACACCA TCGAGAAAAT
CATTCTTGGA GCCCATCCCT CTTTCAGAAA AGGGATTGCT TCCAGCAGAT TTCGTTCTGG AAGATCCAGA CTCTCACTTT
ATATATGTTT GTAAAAAGAT AAATGACACA GAGATAGACA CTATACCCAC ATACCAATTA ACAGCTGATG TTTTATAGCG
CTGACTTACT TTGATGTGCA TCGTGGTCAT TTATGGTCGC CCTTGTCATC TGTCTTAGTT GGATAAGTTA CCACCACCAA
TGTGTTTGTT GTTTGCAATA CCATTTTATT CTCATAAATT AGAGCAATGA AGTTAGCTAG TTTGTAGAGG TGATTGAAAT
TATTAAAATC TGTGAAGAAA TCAGACAAAT TGACTGATTA ATGTATTGTT TTGCCCGGGA TTTTGTTTGG ATGAAGATGA
ATGGATTGTG TGTTGTAACT ATGTACATGG CATAACTTGA ATTCTATTAT AGAATGTTTC CTTGGAAGAT TCAGGATTTG
TGCTACCAAA ATGGTTTGGG AAAGAATGTG CATGTGTGTT ACTGGTGTTA GTTTGAGGGA TAGTGGAT

>Vigan.06G261900.01
ATGTATAGGG ATGTGTCTAG CTGCAACACC TACAACTACG GCGACGCGCT GTATTGGGAC GCGCGCTACA TCCAAGAGGG
TGGTTCCTTC GATTGGTACC AGCGTTATTC TGCTCTCAGA CCGTTCGTGC GCAATTTCAT CCCTCTTTCT TCAAGGATTC
TCATGGTTGG TTGCGGCAAT GCTGTTATGT CCGAGGATAT GGTCAAAGAT GGTTATGAGC ACATCACAAA TATTGATATT
TCATCAGTTG CGATTGAGAT GATGAGAAGA AAATATGAGT ACATACCTCA GCTAAAATAC TTGCAGATGG ATGTCAGGGA
TATGAGCCTT TTTCCAGATG AATCTTTTGA CGGTGTTATT GATAAAGGAA CTCTCGATTC ATTGATGTGT GGTACTGATG
CTCCAATTAG TGCTTCTCAG ATGCTTGCAG AAGTGTGTAG ACTTCTAAAA CCTGGAGGGA CTTATATTTT GATCACGTAT
GGCGATCCAA CAGTAAGGAT GCCTCATCTA AGCAGACCCG TGTTCAATTG GAAAATTATG TTGTATAATA TCCCAAGACC
TGGATTTCAA AAGCCCGAAA GTAGTACACC ATCGAGAAAA TCATTCTTGG AGCCCATCCC TCTTTCAGAA AAGGGATTGC
TTCCAGCAGA TTTCGTTCTG GAAGATCCAG ACTCTCACTT TATATATGTT TGTAAAAAGA TAAATGACAC AGAGATAGAC
ACTATACCCA CATACCAATT AACAGCTGAT GTTTTATAG

>Vigan.06G261900.01
MYRDVSSCNT YNYGDALYWD ARYIQEGGSF DWYQRYSALR PFVRNFIPLS SRILMVGCGN AVMSEDMVKD GYEHITNIDI
SSVAIEMMRR KYEYIPQLKY LQMDVRDMSL FPDESFDGVI DKGTLDSLMC GTDAPISASQ MLAEVCRLLK PGGTYILITY
GDPTVRMPHL SRPVFNWKIM LYNIPRPGFQ KPESSTPSRK SFLEPIPLSE KGLLPADFVL EDPDSHFIYV CKKINDTEID
TIPTYQLTAD VL*