GBrowse Details

Vigan.06G262400.01

Basic Information:
Name: Vigan.06G262400.01
Multiple alignment
Variant Information
Position: Chr06:38207506..38209939 (- strand)
Length: 2434
Functional Information:
Description: Similar to Uncharacterized protein. [I1L5M8, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (IPR008193)
DNA-directed RNA polymerase, RBP11-like dimerisation domain (IPR009025)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.72,25.45,33.05,33.96,51.55,41.33,28.32,32.41
Arabidopsis thaliana homolog: AT3G52090.2
Automatic updates:
Name: NM_001253195 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerase II subunit RPB11-like (LOC100784219), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:38207506..38207800 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr06:38207801..38207833 (- strand)
Length: 33
Type: CDS
Position: Chr06:38208446..38208541 (- strand)
Length: 96
Type: CDS
Position: Chr06:38209336..38209414 (- strand)
Length: 79
Type: CDS
Position: Chr06:38209525..38209614 (- strand)
Length: 90
Type: CDS
Position: Chr06:38209704..38209756 (- strand)
Length: 53
Type: CDS
Position: Chr06:38209757..38209939 (- strand)
Length: 183
Type: five_prime_UTR


>Vigan.06G262400.01
TGGAGGAGCA ACGCCCGTTA GAATAACAAT AAGGGAGTGC GAGGTTTTGG GTTAATGTTT ATGGTTGAAG AGAACATGTT
GGGCCTGGCC CGTTTTAAAT GATGGTATTT GATTTGAAGA GTGGTGGAAG GAGGGAGGAA GAAGAATAGA CAGACATAGC
ATAGAGAGAA AAGAACTGAA GCTATGAATG CTCCAGATCG TTACGAGCGT TTCGTCGTAC CTGAAGGCAC CAAAAAGGTC
TCTTACGAGA GGGACACCAA GATCATCAAT GCCGCCTCCT TCACCATTGA GCGAGAGGAA CACACCATCG GCAACATCTT
GCGCATGCAA CTCCACAGAG ACCCCAACGT GTTATTTGCT GGATACAAGC TTCCCCACCC TCTTCAGTAT AAAATCATTG
TCAGGATACA TACTACAAGC CAGTCTTCGC CAATGCAGGC ATATAACCAG TCTATTAATG ATCTGGACAG GGAACTTGAT
CATCTGAAGA ATGCCTTTGA GGCAGAGATG TTGAAGTTTT CAAGGGACTA TTGATTGGAT GGTGTCACGT TACATGCCCT
GGCAGATATT TTTGAAATAG TGAATCACTT CTGCCAAATG GAATTTAAAT GGGATTTGAG CATTTTGGGA GATTTGTTAA
ATATGGTTCT GTTGAAGAAA TTTTAACATT TGTAAACAGT TACTTTATGA CGGCAATTGT TAGTAAATAG TTGTATGTAT
GGATGATATA AATTGCTGAG GACTTTTCGT GAGGATTAAT CAATCATATT GGCTGAATTA TTTTGGTTAA AATTATTCAG
TAATCATTAA TCATATATAT TGTTTGGAG

>Vigan.06G262400.01
ATGAATGCTC CAGATCGTTA CGAGCGTTTC GTCGTACCTG AAGGCACCAA AAAGGTCTCT TACGAGAGGG ACACCAAGAT
CATCAATGCC GCCTCCTTCA CCATTGAGCG AGAGGAACAC ACCATCGGCA ACATCTTGCG CATGCAACTC CACAGAGACC
CCAACGTGTT ATTTGCTGGA TACAAGCTTC CCCACCCTCT TCAGTATAAA ATCATTGTCA GGATACATAC TACAAGCCAG
TCTTCGCCAA TGCAGGCATA TAACCAGTCT ATTAATGATC TGGACAGGGA ACTTGATCAT CTGAAGAATG CCTTTGAGGC
AGAGATGTTG AAGTTTTCAA GGGACTATTG A

>Vigan.06G262400.01
MNAPDRYERF VVPEGTKKVS YERDTKIINA ASFTIEREEH TIGNILRMQL HRDPNVLFAG YKLPHPLQYK IIVRIHTTSQ
SSPMQAYNQS INDLDRELDH LKNAFEAEML KFSRDY*