GBrowse Details

Vigan.06G266100.01

Basic Information:
Name: Vigan.06G266100.01
Multiple alignment
Variant Information
Position: Chr06:38473216..38478518 (+ strand)
Length: 5303
Functional Information:
Description: Similar to Uncharacterized protein. [I1L5Q4, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.85,7.37,0.03,0.13,0.00,5.30,1.11
Arabidopsis thaliana homolog: AT1G71692.1
Structure :
Position: Chr06:38473216..38473532 (+ strand)
Length: 317
Type: five_prime_UTR
Position: Chr06:38473533..38473714 (+ strand)
Length: 182
Type: CDS
Position: Chr06:38473842..38473923 (+ strand)
Length: 82
Type: CDS
Position: Chr06:38475360..38475421 (+ strand)
Length: 62
Type: CDS
Position: Chr06:38476096..38476195 (+ strand)
Length: 100
Type: CDS
Position: Chr06:38476296..38476337 (+ strand)
Length: 42
Type: CDS
Position: Chr06:38477979..38478020 (+ strand)
Length: 42
Type: CDS
Position: Chr06:38478128..38478223 (+ strand)
Length: 96
Type: CDS
Position: Chr06:38478224..38478518 (+ strand)
Length: 295
Type: three_prime_UTR


>Vigan.06G266100.01
TTTACTTAGA ATAAATTACT TGTCCTTAAC ATATTATAAA ACTCTAACCG GTGCAGATTC CATAGGTACG TGGAAGGCGA
AATGTTATAA TATGCGGTGG TTTGTCATAT AAGATGTTGA ATCCCAGAAA TTGAAAGCAA AATTAGGAGA GAAACTCGGA
GAAAGGTACT ACGTACCTGC TGCAGCAACC TCGAAGCTAG TTCAAACTAG TGGAAGGTTG TGTGCATAGA AGCGCACAAA
ACAAAACCAA ATTGTACTGA GAAAAAGACA GAAAGAAAAA CATCAAACGA TAGATCTGAG GAAGAAGAAT AATCAAGATG
GCTCGTGGAA AGGTTCAGCT TAAGAGAATT GAGAACTCAG TGCACAGACA AGTGACCTTC TGCAAGCGTC GAGCTGGGCT
TCTTAAGAAG GCTAAGGAGC TCTCTGTGCT GTGCGATGCT GAAATTGGTC TTTTCATTTT CTCCGCCCAT GGAAAGCTCT
ATGAACTAGC CACCAAAGGA ACCATGCAAG GCCTGATCGA GAGGTACACG AAGTTCACGC GAGGGGCTCA ACCTGAAGCA
CCACCCGAAA CACTTCCTCT TGATGCAAAA GAGGAATCTT ACTTGCTAAA ACAAGAAATC CAAACACTGC AAAAGAGTAT
CAGGTATTTG TTTGGAGGTG GAAACAAGAC CTCAACAATC GATGAACTAC AAGTGTTGGA GAAGAATATG GAAACTTGGA
TATATCATAT TCGCTCAATG AAGACCAACA TCATGTTACA AGAAATTGAA GCATTGAAAG ATAAGGAGGG AACACTTAAA
GCGGCAAATA AATATCTCCA TGATAAGATT GTGGAGAATG CTGCAATTCA TAACTTTGCT CAATTTCCCA CGGATGTTCC
GTACCCACTA ATTATACAAG ATGGAACTTT TCAACTCTAT TAATATGTTG TTTCTATAAT GTTTTGGTTA TAGGCTTTAT
TAATAAAGGG AAAAATTATG GAGGCTGTGT TGTGTTACAC AACATTAAAA GTAAAGTATG AACATTGTAC TTGTGCTACA
AACTACGCAA TAATTTGTAA CATTAATATT GTCTTACTCT AATAAGTTTA TAATTTATAA TGTAAAGTCA GAAAAGTGTG
AGTTCTGACT AGTAGTATCT TTTCTCTGTC ATTGACAATA ATGTAAAATA GTTGACGAGA GTAACAATGA TATTGTATGT
AATAATTTTG TATGTTGT

>Vigan.06G266100.01
ATGGCTCGTG GAAAGGTTCA GCTTAAGAGA ATTGAGAACT CAGTGCACAG ACAAGTGACC TTCTGCAAGC GTCGAGCTGG
GCTTCTTAAG AAGGCTAAGG AGCTCTCTGT GCTGTGCGAT GCTGAAATTG GTCTTTTCAT TTTCTCCGCC CATGGAAAGC
TCTATGAACT AGCCACCAAA GGAACCATGC AAGGCCTGAT CGAGAGGTAC ACGAAGTTCA CGCGAGGGGC TCAACCTGAA
GCACCACCCG AAACACTTCC TCTTGATGCA AAAGAGGAAT CTTACTTGCT AAAACAAGAA ATCCAAACAC TGCAAAAGAG
TATCAGGTAT TTGTTTGGAG GTGGAAACAA GACCTCAACA ATCGATGAAC TACAAGTGTT GGAGAAGAAT ATGGAAACTT
GGATATATCA TATTCGCTCA ATGAAGACCA ACATCATGTT ACAAGAAATT GAAGCATTGA AAGATAAGGA GGGAACACTT
AAAGCGGCAA ATAAATATCT CCATGATAAG ATTGTGGAGA ATGCTGCAAT TCATAACTTT GCTCAATTTC CCACGGATGT
TCCGTACCCA CTAATTATAC AAGATGGAAC TTTTCAACTC TATTAA

>Vigan.06G266100.01
MARGKVQLKR IENSVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK GTMQGLIERY TKFTRGAQPE
APPETLPLDA KEESYLLKQE IQTLQKSIRY LFGGGNKTST IDELQVLEKN METWIYHIRS MKTNIMLQEI EALKDKEGTL
KAANKYLHDK IVENAAIHNF AQFPTDVPYP LIIQDGTFQL Y*