GBrowse Details

Vigan.07G004300.01

Basic Information:
Name: Vigan.07G004300.01
Multiple alignment
Variant Information
Position: Chr07:313235..316361 (- strand)
Length: 3127
Functional Information:
Description: Similar to cinnamoyl-CoA reductase 1. [XP_003543700.1, Glycine max]
GO: Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.60,1.18,49.56,139.81,40.07,114.76,40.67,112.64
Arabidopsis thaliana homolog: AT1G15950.1
Automatic updates:
Name: NM_001253129 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like (LOC100789070), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001367057 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cinnamoyl-CoA reductase (CCR), mRNA.
PubMed ID: 24382019 NCBI(pubmed)
Status: Known Variant
Name: NM_001425020 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula cinnamoyl-CoA reductase 1 (LOC25487973), mRNA.
PubMed ID: 31837401 NCBI(pubmed)
23136381 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:313235..313647 (- strand)
Length: 413
Type: three_prime_UTR
Position: Chr07:313648..313831 (- strand)
Length: 184
Type: CDS
Position: Chr07:314712..315064 (- strand)
Length: 353
Type: CDS
Position: Chr07:315165..315350 (- strand)
Length: 186
Type: CDS
Position: Chr07:315818..315972 (- strand)
Length: 155
Type: CDS
Position: Chr07:316104..316239 (- strand)
Length: 136
Type: CDS
Position: Chr07:316240..316361 (- strand)
Length: 122
Type: five_prime_UTR


>Vigan.07G004300.01
TTTTCCCTAT AAAAAGACAC TCTCCACGTA ACTTTTGTCA CCATACACTT CACCAGTTTT TCCTTCGTTT TCTTCTACTT
TCCCTTCCAT TCCCTAACAA CAACGTCATC ATCATCATCA CCATGCCTTC TGCCGAATCA TTGCCACCTT CCTCCCAAAC
AATCTGTGTC ACCGGCGCCG GTGGCTTCAT TGCATCTTGG ATGGTAAAAC TTCTCTTGGA GAAAGGCTAC ACTGTGAGAG
GAACACTCAG AAACCCAGAT GATCCCAAGA ACGGACACTT GAAAGAGTTT GAAGGAGCCT CCGACAGACT AACTCTGCAT
AAGGTTGACC TCCTTGACGT TGACTCCGTT AGATCAGTAA TTCACGGCTG CCATGGTGTC TTTCACACAG CTTCTCCCGT
CACCGATAAC CCCGAAGAAA TGGTGGAGCC AGCAGTGAAT GGAGCGAAGA ATATTATCAT AGCAGCTGCA GAGGCAAAAG
TACGACGTGT GGTGTTCACC TCATCGATTG GTGCCGTATA CATGGACCCC AAAAGGAGCA TCGATTTGTT GGTTGACGAG
TCTTGTTGGA GTGATTTAGA GTATTGCAAG AACACTAAGA ATTGGTACTG CTATGGGAAA GCTGTGGCTG AACAAGCAGC
ATGGGACACT GCCAAAGAGA AAGGAGTGGA CTTGGTTGTA GTGAACCCTG TATTGGTTCT TGGACCATTA CTACAACCAA
CCATCAATGC TAGCACGATT CACATCCTCA AGTACCTCAC TGGCTCTGCC AAGACCTATG CAAATGCCAC ACAGGCTTAT
GTGCATGTGA AGGATGTGGC ATTGGCCCAC ATACTTGTTT ATGAAAAGCC TTCTGCTTCT GGTCGATACT TATGTGCTGA
AAGCTCCCTG CACCGTGGAG AATTAGTTGA AATTCTGGCA AAGTATTTTC CTGAGTACCC AGTTCCCACC AAGTGTTCCG
ATGAAAAGAA TCCCAGGGCA AAACCATACA CCTTTTCAAA CCAGAAGCTC AAAGATTTGG GATTGGAATT CACTCCAGTG
AGTCAGTGTC TGTATGAAAC GGTTAAGAGT CTGCAGGAGA AAGGGCACCT TCCTGTTCCT GCAAAGCAGG AAGATTCAAC
TACAGTGAAA TCATGAACAA GATAGCCCTT TTATTTCATT TGTCAATACC AGTTTAATTC TGGGTTAGCT CATGTTGTTA
TAAGAGAATC CCACGACAGA AAACTGTATT TGGATTTTTG TAAATGGACA TCAACCATAT TGTTGCCATT TATGGACTTA
ATGATATTAA TGATATTTTT AATTTTGTTT TCAAATAATA TTGTCCCCAG CAAAAATCTC CGACTTCCTT TATGGGGAGA
AGAATATTAG CTAAACTCTG AATTCAAAAG AAAAGATTCC TTCTTTATTA CAAGGAAATC GAGTGAAAAG GAAGGAATTC
AGAAGAACTA GATTTCTCAC TTATAGGTGG GAAATAGAGT GGAAAAGGAA GGAGTTTTTA AAAAAAAGAA GATATATTTG
ATTGAAGAAA AGTTAAAAAA ACAAAAAAC

>Vigan.07G004300.01
ATGCCTTCTG CCGAATCATT GCCACCTTCC TCCCAAACAA TCTGTGTCAC CGGCGCCGGT GGCTTCATTG CATCTTGGAT
GGTAAAACTT CTCTTGGAGA AAGGCTACAC TGTGAGAGGA ACACTCAGAA ACCCAGATGA TCCCAAGAAC GGACACTTGA
AAGAGTTTGA AGGAGCCTCC GACAGACTAA CTCTGCATAA GGTTGACCTC CTTGACGTTG ACTCCGTTAG ATCAGTAATT
CACGGCTGCC ATGGTGTCTT TCACACAGCT TCTCCCGTCA CCGATAACCC CGAAGAAATG GTGGAGCCAG CAGTGAATGG
AGCGAAGAAT ATTATCATAG CAGCTGCAGA GGCAAAAGTA CGACGTGTGG TGTTCACCTC ATCGATTGGT GCCGTATACA
TGGACCCCAA AAGGAGCATC GATTTGTTGG TTGACGAGTC TTGTTGGAGT GATTTAGAGT ATTGCAAGAA CACTAAGAAT
TGGTACTGCT ATGGGAAAGC TGTGGCTGAA CAAGCAGCAT GGGACACTGC CAAAGAGAAA GGAGTGGACT TGGTTGTAGT
GAACCCTGTA TTGGTTCTTG GACCATTACT ACAACCAACC ATCAATGCTA GCACGATTCA CATCCTCAAG TACCTCACTG
GCTCTGCCAA GACCTATGCA AATGCCACAC AGGCTTATGT GCATGTGAAG GATGTGGCAT TGGCCCACAT ACTTGTTTAT
GAAAAGCCTT CTGCTTCTGG TCGATACTTA TGTGCTGAAA GCTCCCTGCA CCGTGGAGAA TTAGTTGAAA TTCTGGCAAA
GTATTTTCCT GAGTACCCAG TTCCCACCAA GTGTTCCGAT GAAAAGAATC CCAGGGCAAA ACCATACACC TTTTCAAACC
AGAAGCTCAA AGATTTGGGA TTGGAATTCA CTCCAGTGAG TCAGTGTCTG TATGAAACGG TTAAGAGTCT GCAGGAGAAA
GGGCACCTTC CTGTTCCTGC AAAGCAGGAA GATTCAACTA CAGTGAAATC ATGA

>Vigan.07G004300.01
MPSAESLPPS SQTICVTGAG GFIASWMVKL LLEKGYTVRG TLRNPDDPKN GHLKEFEGAS DRLTLHKVDL LDVDSVRSVI
HGCHGVFHTA SPVTDNPEEM VEPAVNGAKN IIIAAAEAKV RRVVFTSSIG AVYMDPKRSI DLLVDESCWS DLEYCKNTKN
WYCYGKAVAE QAAWDTAKEK GVDLVVVNPV LVLGPLLQPT INASTIHILK YLTGSAKTYA NATQAYVHVK DVALAHILVY
EKPSASGRYL CAESSLHRGE LVEILAKYFP EYPVPTKCSD EKNPRAKPYT FSNQKLKDLG LEFTPVSQCL YETVKSLQEK
GHLPVPAKQE DSTTVKS*