GBrowse Details

Vigan.07G009300.01

Basic Information:
Name: Vigan.07G009300.01
Multiple alignment
Variant Information
Position: Chr07:648166..651976 (- strand)
Length: 3811
Functional Information:
Description: Similar to Uncharacterized protein. [A0A059BYK8, Eucalyptus grandis]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.63,3.03,10.82,13.52,20.01,10.38,11.44,14.79
Arabidopsis thaliana homolog: AT3G18430.1
Automatic updates:
Name: NM_001249298 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500057 (LOC100500057), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:648166..648708 (- strand)
Length: 543
Type: three_prime_UTR
Position: Chr07:648709..648759 (- strand)
Length: 51
Type: CDS
Position: Chr07:648843..648917 (- strand)
Length: 75
Type: CDS
Position: Chr07:649407..649516 (- strand)
Length: 110
Type: CDS
Position: Chr07:650996..651092 (- strand)
Length: 97
Type: CDS
Position: Chr07:651246..651370 (- strand)
Length: 125
Type: CDS
Position: Chr07:651543..651612 (- strand)
Length: 70
Type: CDS
Position: Chr07:651613..651976 (- strand)
Length: 364
Type: five_prime_UTR


>Vigan.07G009300.01
TGTGAAAAGG TAGACGGTCA CTGGTCTGCG GGTAGCATCG CAACGCAACA GGGCATTGGT GCGTTCGGTA TAGTCGATGA
TGACTAGGCA ATACACGTGT ATATATTCGC AGGTGGTCTG AAGCGTGCCT GGGCCAGCTA GATACGTGTC TGTTCAATCC
AGCCCAACAA CCATTTCATC TCTGCTCTTA AGGTTTTCTA TCTTCTCCCT TTGTTGTAAA TTTTGTATTT TCTTTTTCAT
TTCTTGTTCT ACTATATGCA GTGAAAATAT CATTTGATGT TTGCTATTCT CCAGTCCAGT CCAGTGGTTA GGTGAGTAAT
AATAGATGGT TCTGCAGATT TTGGTTTGAA TCCCAAAACT AGTGATGGGG ACTGCATCAT CTATGTTAAC TCAGTATGAC
ATCGAGGAAG TTCAAGAACA CTGCAATAAT TTATTTTCCC AGCAGGAAAT TGTGTCGTTG TATCAAAGAT TTTGTCAACT
TGACCGCAAT GCCAAGGGAT TTATTTCGGC GGATGAGTTC TTATCCGTCC CTGAGTTTGC CATGAATCCG CTTTCTCAGA
GGCTGCTCAA GATGGTTGAC GGTTTGAATT TTAAAGACTT TGTGGCCTTC TTATCTGCAT TCAGTGCCAA AGCTAATGCA
CAACAAAAAA TAGAGCTTAT TTTCAAAGTC TTTGATTCAG ATCGTAATGG AAAGGTGTCT TTCAAAGATA TATTGGAAGT
GCTAAAAGAT TTGTCAGGTT CATTCATGTC CGATGACCAG AGAGAGGAAG CTCTCAGTCA AGTTCTAAAA GAAGCAGGAT
ACACAAAAGA CTCCTACTTG ACCTTGGATG ACTTCATCAA GGTTCTTGGT CAATATGACC TAAAAATGGA TGTTGAAGTC
CCTGTTGATT GAAACTTGCT TCAGTTTTCC CTGTCCTGGT GAAAGATAAA ACTGCAAACT CTATTCATAA GATTCTTGTA
ATATATTTCA TGTGGAAATG AAAAGTGCAC AGTACCTTTA TCCTTTTCTT CTTGGGATTC TTGTAATGCC GTTGCCTTTC
AGCCACTACC TGTTTTGGAG CGAATTTGAA AAGCTCGAGG TTGATTCAGT TTTTCACGTT CCTTGACAGT TTTTTTTGCA
ATATTTTAGT CTCCTAGATT CAGAGTTAGG TAATTCTATC CTATTTGAAG TTTCAACTGT TGCTGAAATT GCCAAGTTCA
AGTTTCTTTC TGTGTTATAA TCTCAGCAGT AAGGAATTGT CTCTTCCGCA CAAAAGCAGC ATGAAGATTG TTGCTGTGTT
AGATTAGAAC ATTGTGATTT TCATCATGAT TTGTGATACT AGTCTGATTT GATTGTCATC CAAACAAGAT AATTTTCACG
GAGTATTTGG ATACTCTATA AAAGTACAGT ACCCTTTATG TATTAATATT CATTTACCCT TATAAAAGAG AAAAT

>Vigan.07G009300.01
ATGGGGACTG CATCATCTAT GTTAACTCAG TATGACATCG AGGAAGTTCA AGAACACTGC AATAATTTAT TTTCCCAGCA
GGAAATTGTG TCGTTGTATC AAAGATTTTG TCAACTTGAC CGCAATGCCA AGGGATTTAT TTCGGCGGAT GAGTTCTTAT
CCGTCCCTGA GTTTGCCATG AATCCGCTTT CTCAGAGGCT GCTCAAGATG GTTGACGGTT TGAATTTTAA AGACTTTGTG
GCCTTCTTAT CTGCATTCAG TGCCAAAGCT AATGCACAAC AAAAAATAGA GCTTATTTTC AAAGTCTTTG ATTCAGATCG
TAATGGAAAG GTGTCTTTCA AAGATATATT GGAAGTGCTA AAAGATTTGT CAGGTTCATT CATGTCCGAT GACCAGAGAG
AGGAAGCTCT CAGTCAAGTT CTAAAAGAAG CAGGATACAC AAAAGACTCC TACTTGACCT TGGATGACTT CATCAAGGTT
CTTGGTCAAT ATGACCTAAA AATGGATGTT GAAGTCCCTG TTGATTGA

>Vigan.07G009300.01
MGTASSMLTQ YDIEEVQEHC NNLFSQQEIV SLYQRFCQLD RNAKGFISAD EFLSVPEFAM NPLSQRLLKM VDGLNFKDFV
AFLSAFSAKA NAQQKIELIF KVFDSDRNGK VSFKDILEVL KDLSGSFMSD DQREEALSQV LKEAGYTKDS YLTLDDFIKV
LGQYDLKMDV EVPVD*