GBrowse Details

Vigan.07G011000.01

Basic Information:
Name: Vigan.07G011000.01
Multiple alignment
Variant Information
Position: Chr07:745731..747080 (+ strand)
Length: 1350
Functional Information:
Description: Similar to protein LURP-one-related 12-like. [XP_004486664.1, Cicer arietinum]
InterPro: LURP1-like domain (IPR007612)
Tubby C-terminal-like domain (IPR025659)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.74,3.64,11.23,71.13,4.20,40.56,17.34,36.02
Arabidopsis thaliana homolog: AT3G15810.1
Automatic updates:
Name: NM_001249394 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LOR domain-containing protein (LOC100527456), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254059 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein LURP-one-related 12-like (LOC100787085), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:745731..745850 (+ strand)
Length: 120
Type: five_prime_UTR
Position: Chr07:745851..746093 (+ strand)
Length: 243
Type: CDS
Position: Chr07:746348..746758 (+ strand)
Length: 411
Type: CDS
Position: Chr07:746759..747080 (+ strand)
Length: 322
Type: three_prime_UTR


>Vigan.07G011000.01
GAAGATTATT CAATTGGGGG AATATGAATA GTGCTTTTCC TTTGCCCCCA TTAAAAATAA CGTAATTCTA ATACAAATAC
CAAAGAAACC CACATCACAA TTCCACACTA CCCTTTGTGT ATGGCTTCTC ACGCTGCTGC GGAAAACATG AACGAGGTGG
GACCTGGATA CGTCTTCAAA GAAGAGATCC ATCTCACCGT CCTCAAAACC TCTCTCTTCT TCGCCGGCGA TGGCTTCACC
GTCTACGACT GCAAGGGCCA ACTCGTCTTC CGAGTTGACT CTTACGGACC CGACACTCGC GACAGAGACG AACTCGTTCT
CATGGATCCT AACGGACGTT GTCTCCTAAC TGTTCGTCGA AAGAGGCCGA GTTTGCATCA ACGGTGGGAG GGTTTCAAAG
GGGAGAGAAT GGACGGTGAT AAACCTATTT TCAGCGTGAA GAGAGCGTCG ATCATTGGAC GGGCGCGCGC GAGTTTGACG
GTGGAGATGT ACGATAACCC TGGTGAGGAG TACCAGATCG AAGGGTGCTT CTCTCAGCGA TGCTGCACGG TATTCAATGT
GACGAAGGAA TCTGTGGCTG AGATTCGACG TAAGGTGGAC CCCACCACCA GTGTTGTGCT TGGGAAGGAA GTGTTCTCTC
TGTGTGTTAA GGCTGGGTTT GACGCGGCTT TTGCCATGGG GTTCGTTCTT GTCCTGGATC AGATCAACGG TGAGGACTAC
GTTGACAGTG GTGCGACCGC GGAGCCTGCG GTGCACCCAG CCACAGAAGA TTAAAAGGGA GTAATAGAGT GAACTTCACT
TCCAGATTTG ATCCCACTGG CATTGCGTAA AAATCTGGCG AGAGAGCCTC GGTGATGGGT AGCGCTTTAT TTAATTCAAC
TCACTAATCT TTGGGGTTTG GATTGTCCTT CTGAAGGGAA CCTCTGCCCC TTCTTTTCTG GGTCATGCCC TTGAAAGAAT
AAATTTTCAT GTAAATTTTA TATTGTATTA TGCATAAAAG TATAAGTTGA GCTTTATCCT ATTTTCAACC GATTATCCCT
TATTTGTAAT TTGTATTTTA AATTGTTCGT TATATATATA GATATGATTT AGCTAA

>Vigan.07G011000.01
ATGGCTTCTC ACGCTGCTGC GGAAAACATG AACGAGGTGG GACCTGGATA CGTCTTCAAA GAAGAGATCC ATCTCACCGT
CCTCAAAACC TCTCTCTTCT TCGCCGGCGA TGGCTTCACC GTCTACGACT GCAAGGGCCA ACTCGTCTTC CGAGTTGACT
CTTACGGACC CGACACTCGC GACAGAGACG AACTCGTTCT CATGGATCCT AACGGACGTT GTCTCCTAAC TGTTCGTCGA
AAGAGGCCGA GTTTGCATCA ACGGTGGGAG GGTTTCAAAG GGGAGAGAAT GGACGGTGAT AAACCTATTT TCAGCGTGAA
GAGAGCGTCG ATCATTGGAC GGGCGCGCGC GAGTTTGACG GTGGAGATGT ACGATAACCC TGGTGAGGAG TACCAGATCG
AAGGGTGCTT CTCTCAGCGA TGCTGCACGG TATTCAATGT GACGAAGGAA TCTGTGGCTG AGATTCGACG TAAGGTGGAC
CCCACCACCA GTGTTGTGCT TGGGAAGGAA GTGTTCTCTC TGTGTGTTAA GGCTGGGTTT GACGCGGCTT TTGCCATGGG
GTTCGTTCTT GTCCTGGATC AGATCAACGG TGAGGACTAC GTTGACAGTG GTGCGACCGC GGAGCCTGCG GTGCACCCAG
CCACAGAAGA TTAA

>Vigan.07G011000.01
MASHAAAENM NEVGPGYVFK EEIHLTVLKT SLFFAGDGFT VYDCKGQLVF RVDSYGPDTR DRDELVLMDP NGRCLLTVRR
KRPSLHQRWE GFKGERMDGD KPIFSVKRAS IIGRARASLT VEMYDNPGEE YQIEGCFSQR CCTVFNVTKE SVAEIRRKVD
PTTSVVLGKE VFSLCVKAGF DAAFAMGFVL VLDQINGEDY VDSGATAEPA VHPATED*