GBrowse Details

Vigan.07G012300.01

Basic Information:
Name: Vigan.07G012300.01
Multiple alignment
Variant Information
Position: Chr07:822042..825711 (+ strand)
Length: 3670
Functional Information:
Description: Similar to Uncharacterized protein. [I1MSH9, Glycine max]
GO: Biological Process: signal peptide processing (GO:0006465)
Cellular Component: membrane (GO:0016020)
Molecular Function: peptidase activity (GO:0008233)
InterPro: Peptidase S26B, eukaryotic signal peptidase (IPR001733)
Peptidase S24/S26A/S26B/S26C (IPR015927)
Peptidase S24/S26A/S26B (IPR019759)
Peptidase S24/S26, beta-ribbon domain (IPR028360)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.21,34.99,66.83,51.18,72.44,199.23,56.62,64.95
Arabidopsis thaliana homolog: AT1G52600.1
Automatic updates:
Name: NM_001255564 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max signal peptidase complex catalytic subunit SEC11C-like (LOC100807064), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:822042..822159 (+ strand)
Length: 118
Type: five_prime_UTR
Position: Chr07:822160..822238 (+ strand)
Length: 79
Type: CDS
Position: Chr07:822803..822915 (+ strand)
Length: 113
Type: CDS
Position: Chr07:823118..823189 (+ strand)
Length: 72
Type: CDS
Position: Chr07:823423..823458 (+ strand)
Length: 36
Type: CDS
Position: Chr07:824201..824246 (+ strand)
Length: 46
Type: CDS
Position: Chr07:824548..824635 (+ strand)
Length: 88
Type: CDS
Position: Chr07:825035..825092 (+ strand)
Length: 58
Type: CDS
Position: Chr07:825307..825357 (+ strand)
Length: 51
Type: CDS
Position: Chr07:825358..825711 (+ strand)
Length: 354
Type: three_prime_UTR


>Vigan.07G012300.01
GAAAACAAAA GGAAGAGTTA CGCCTTGATG TTATAGTGAA GTTGGGACTT GGGAGCAGCC ACCATAGACT TGTGCATTCT
GCATTGAAGC GTAGAGAAGA AGAGAAGAAG CAACAGCAAT GGGTTGGATC GGAGAGACTA TGGATTCCAT CAAATCTCTT
CAGATCCGGC AGGTTCTCAC TCAGGCTGTT AGCCTCGGCA TGATTGTTAC GTCTGCGTTG ATAATATGGA AGGCATTGAT
GTGCATTACT GGCAGTGAAT CTCCTGTTGT CGTTGTTCTT TCTGGAAGCA TGGAACCAGG ATTCAAGCGG GGAGACATCT
TATTCCTGCA CATGAGTAAA GATCCAATTC GGGCGGGGGA GATTGTTGTG TTTAATGTGG ATGGACGTGA GATTCCAATT
GTTCATCGTG TAATTAAGGT ACACGAAAGG GAGGATACTG GGGAGGTTGA TGTTCTCACA AAAGGAGACA ACAATTATGG
GGATGACAGG CTATTGTATG CTCATGGTCA GCTTTGGCTG CAAAGGCACC ACATAATGGG TAGAGCTGTC GGGTTCTTAC
CTTACGTGGG CTGGGTGACC ATTATTATGA CTGAAAAGCC TATTATCAAG TATATTCTCA TTGGTGCTTT GGGGTTGCTC
GTGATAACTT CAAAAGATTA AATGAATATT CCAAAATCAA ACTGCGGCCT AAACTCCGAT GGTAGTATGA GCAGATGTCA
TGCTTTTCTT GAAGGTGTCA TTTTGTACCA TTCATAGTAT GGGGACTATA TAATGTTAAG AATTAATGAA AAATAGTTGA
ATTTTGATAT TTACCTTGAT GAGTTGGCAT CTGATTGAAC TCCATCGCCT CCTTTATATT CTATTTTAGT GCAGTTTAAG
ATTAAGCCTA TAAATATGCT GTTTCTTATC CTCAATGCCA CCTGCGGTCT TTGTCCATTA AAAACTTGCT TAGTTCTTTG
TGAAAAACTT TAGCTTGCCC ATGCTTTACT AATCTAATAT ATAGTTTTAT TCAAA

>Vigan.07G012300.01
ATGGGTTGGA TCGGAGAGAC TATGGATTCC ATCAAATCTC TTCAGATCCG GCAGGTTCTC ACTCAGGCTG TTAGCCTCGG
CATGATTGTT ACGTCTGCGT TGATAATATG GAAGGCATTG ATGTGCATTA CTGGCAGTGA ATCTCCTGTT GTCGTTGTTC
TTTCTGGAAG CATGGAACCA GGATTCAAGC GGGGAGACAT CTTATTCCTG CACATGAGTA AAGATCCAAT TCGGGCGGGG
GAGATTGTTG TGTTTAATGT GGATGGACGT GAGATTCCAA TTGTTCATCG TGTAATTAAG GTACACGAAA GGGAGGATAC
TGGGGAGGTT GATGTTCTCA CAAAAGGAGA CAACAATTAT GGGGATGACA GGCTATTGTA TGCTCATGGT CAGCTTTGGC
TGCAAAGGCA CCACATAATG GGTAGAGCTG TCGGGTTCTT ACCTTACGTG GGCTGGGTGA CCATTATTAT GACTGAAAAG
CCTATTATCA AGTATATTCT CATTGGTGCT TTGGGGTTGC TCGTGATAAC TTCAAAAGAT TAA

>Vigan.07G012300.01
MGWIGETMDS IKSLQIRQVL TQAVSLGMIV TSALIIWKAL MCITGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG
EIVVFNVDGR EIPIVHRVIK VHEREDTGEV DVLTKGDNNY GDDRLLYAHG QLWLQRHHIM GRAVGFLPYV GWVTIIMTEK
PIIKYILIGA LGLLVITSKD *