GBrowse Details

Vigan.07G015400.01

Basic Information:
Name: Vigan.07G015400.01
Multiple alignment
Variant Information
Position: Chr07:1011702..1014931 (- strand)
Length: 3230
Functional Information:
Description: Similar to cytochrome c oxidase subunit 5b-2, mitochondrial-like. [XP_004486697.1, Cicer arietinum]
GO: Cellular Component: mitochondrial envelope (GO:0005740)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit Vb (IPR002124)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.89,8.83,18.99,10.47,33.87,13.59,11.59,10.27
Arabidopsis thaliana homolog: AT1G80230.1
Automatic updates:
Name: NM_001250296 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative cytochrome c oxidase subunit 5b (LOC100527520), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255046 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome c oxidase subunit 5b-2, mitochondrial-like (LOC100801050), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1011702..1012170 (- strand)
Length: 469
Type: three_prime_UTR
Position: Chr07:1012171..1012224 (- strand)
Length: 54
Type: CDS
Position: Chr07:1013103..1013182 (- strand)
Length: 80
Type: CDS
Position: Chr07:1013296..1013362 (- strand)
Length: 67
Type: CDS
Position: Chr07:1014176..1014226 (- strand)
Length: 51
Type: CDS
Position: Chr07:1014449..1014534 (- strand)
Length: 86
Type: CDS
Position: Chr07:1014627..1014852 (- strand)
Length: 226
Type: CDS
Position: Chr07:1014853..1014931 (- strand)
Length: 79
Type: five_prime_UTR


>Vigan.07G015400.01
GAAGGTTTGA TTAGTGATTT GTTTGACTGG CACGTGCGAC GGGGGTGGCT CACGTGGCAA GGTTGGCCTG TTCTTGAGCA
TGGTTGCGAT TCATATTGAT AGTGTGAGCG AGTATTTGTG CAGTTGGTGT TTGGAAGGAG ACAGAAGAAA ACGAGAAGAA
CGCCATTTCC TCAGATCGAT AACCCTAATC ATGTTGCGGA GATTCCTCTC TCATTCCAAT CTCAAATCTC TACACACGGC
GCTCTCACCT TCTCGTCCCC GATTCGCCGC TCCTCTCCTC ACCCGCCACG TCACTGCTCA ATCAGGCGCT TCTTCCGTTA
GAAAGAGGGT CGAAGATGTC GTGCCAATTG CTACCGGCCA CGAGCGTGAG GAGATTCAGG CCAGTCTCGA GGGAAGGGAT
ATTCTTGAAA TCAACCATCC TGAAGGTCCT TTCGGCACAA AGGAAGCCCC TGCTATTGTT AAATCTTACT TTGACAGAAG
GATAATTGGA TGCCCAGGAG GTGAAGGTGA AGATGAGCAT GATGTTGTAT GGTTTTGGCT GGAGAATGGC AAGCCTCATG
AATGTCCTGT GTGCTCACAG TACTTTGAGC TCAAAGTGGT CGGACCTGGT GGTGATCCTT ATGGACACGG CGATCATCAT
TGATTTCATC CCGCAATTTT CTTTCAGAAA TAAAATTTGC AAAGAGAAGA GAGACAATTT CACCTCTCAA AATTACGAGG
CCTCGTTTTG ATTGGTCTAT ATACCTTGCA GTTTTGCGAG TTTAGAATAG AAATTTTTTC AGTATTTATT AGACACAAGC
TGGTCATTCG ATTGAGCTAT CAAATCCCGC AAGGATGTCT TTTTTGGCTC TGCCAAATAA TTGATAGCAA CACTGATTCT
TTGTCGATTC TTGAATATAG AGCCTTCAAC TATTTTTAGC ACCCCTAAAC CACGAAAGGG CGTAAGGGAC TACAAATGTG
ATCGAATTGA ATAATTACTA GCAATGCAGA TGGAGACAAC TCAAGTATTT TCCTTTTTGT TAAATTATGC ATATAACCCT
TTGTGCTGGC GTGTTGTAGT TAACATTTTA ACTTAAGTTT CCATAAGATT TCTTAAATGT CGACTTTTTT TT

>Vigan.07G015400.01
ATGGTTGCGA TTCATATTGA TAGTGTGAGC GAGTATTTGT GCAGTTGGTG TTTGGAAGGA GACAGAAGAA AACGAGAAGA
ACGCCATTTC CTCAGATCGA TAACCCTAAT CATGTTGCGG AGATTCCTCT CTCATTCCAA TCTCAAATCT CTACACACGG
CGCTCTCACC TTCTCGTCCC CGATTCGCCG CTCCTCTCCT CACCCGCCAC GTCACTGCTC AATCAGGCGC TTCTTCCGTT
AGAAAGAGGG TCGAAGATGT CGTGCCAATT GCTACCGGCC ACGAGCGTGA GGAGATTCAG GCCAGTCTCG AGGGAAGGGA
TATTCTTGAA ATCAACCATC CTGAAGGTCC TTTCGGCACA AAGGAAGCCC CTGCTATTGT TAAATCTTAC TTTGACAGAA
GGATAATTGG ATGCCCAGGA GGTGAAGGTG AAGATGAGCA TGATGTTGTA TGGTTTTGGC TGGAGAATGG CAAGCCTCAT
GAATGTCCTG TGTGCTCACA GTACTTTGAG CTCAAAGTGG TCGGACCTGG TGGTGATCCT TATGGACACG GCGATCATCA
TTGA

>Vigan.07G015400.01
MVAIHIDSVS EYLCSWCLEG DRRKREERHF LRSITLIMLR RFLSHSNLKS LHTALSPSRP RFAAPLLTRH VTAQSGASSV
RKRVEDVVPI ATGHEREEIQ ASLEGRDILE INHPEGPFGT KEAPAIVKSY FDRRIIGCPG GEGEDEHDVV WFWLENGKPH
ECPVCSQYFE LKVVGPGGDP YGHGDHH*