GBrowse Details

Vigan.07G017700.01

Basic Information:
Name: Vigan.07G017700.01
Multiple alignment
Variant Information
Position: Chr07:1177135..1181610 (+ strand)
Length: 4476
Functional Information:
Description: Similar to Uncharacterized protein. [I1M5N7, Glycine max]
InterPro: P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.33,1.22,6.07,35.98,3.06,8.47,2.82,7.86
Arabidopsis thaliana homolog: AT1G80380.2
Automatic updates:
Name: NM_001255905 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max D-glycerate 3-kinase, chloroplastic-like (LOC100806896), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1177135..1177308 (+ strand)
Length: 174
Type: five_prime_UTR
Position: Chr07:1177309..1177510 (+ strand)
Length: 202
Type: CDS
Position: Chr07:1177943..1178316 (+ strand)
Length: 374
Type: CDS
Position: Chr07:1178612..1178691 (+ strand)
Length: 80
Type: CDS
Position: Chr07:1178802..1178853 (+ strand)
Length: 52
Type: CDS
Position: Chr07:1178948..1178989 (+ strand)
Length: 42
Type: CDS
Position: Chr07:1179072..1179150 (+ strand)
Length: 79
Type: CDS
Position: Chr07:1179228..1179259 (+ strand)
Length: 32
Type: CDS
Position: Chr07:1179351..1179419 (+ strand)
Length: 69
Type: CDS
Position: Chr07:1179739..1179813 (+ strand)
Length: 75
Type: CDS
Position: Chr07:1179957..1180073 (+ strand)
Length: 117
Type: CDS
Position: Chr07:1180161..1180211 (+ strand)
Length: 51
Type: CDS
Position: Chr07:1180339..1180482 (+ strand)
Length: 144
Type: CDS
Position: Chr07:1180483..1181610 (+ strand)
Length: 1128
Type: three_prime_UTR


>Vigan.07G017700.01
AGAAAGAGGA CTTGTTCGTA AATCTGAATA GATAAAATTG CAGATTTTTT GTTCATAGAA TTATTTTATG GTGCTCCTCT
TCCAATCTGT AGGCCAAAGA GGTGAAGATT ACGTGGCGTC TAAGCCCCGT TGGTGTTCTT AGTTGCAAAG TAGAGAGAGA
AAGACACATC AAAAATGGCG ACTCTGAATC TGTTCTCTCA GCCATGGCAA CCCACAATTT CACCTTCTTT CTTCTGTTGT
TCTAATTCAA ACAACAACAT TTCCTATGCT TATCAAAATC ATAATATCAT TTCCAACAAT TCTAAATTTC ATTTCTTTTC
CAATTCTCGT CAATTCTCTG TTCTTTCTCA ATTCTCCTCT CACTCCTCAA AGTCAGGCAG TGGAAGTTCA TGGTTGCAAA
ACAGTTCCTT TGCTTCTGGC ATTGAGTACA GGAAGCGTCC TCTATATTCT GTATTTCCAA CAAAACCTGC TCAAGTTTCC
TCTGTGGAAG ACCTCTATCA GTTTATTTGC TCGGGACCTC TGCTTGACAA AATAGGCCTC ACACAAGAGC AGGTGGCTGA
GTCCATTGAT AACTGGTTAC TGTATGGCCG GTACCTATGC AGATTGTTTC AGCTTAATGA ATTGTACCTT ACAGAGCCTC
AAAAGGCTAG GATTTATCAC TACTATGTAC CAGTCTTTCT CTGGTGTGAA CAACAGATCG CGGAGCATCA GTCCAAATTC
AAAGATGGAG AAGAAATTCC TCCTTTGGTG ATTGGTTTCA GTGCCCCTCA AGGCTGTGGG AAGACAACCC TTGTCTTTGC
TCTTGACTAT CTTTTTGAAG TGATTGGCAG GAAGTCTGCC ACAGTATCTA TAGATGATTT TTATTTGACT GCTGAAGGTC
AGACTAAACT AAGAGAAGCT AATCCAGGAA ATGCACTTCT TGAGTATCGC GGAAATGCAG GAAGCCATGA TCTTGCTCTT
TCTGTTGAAA CTCTGACAGC TTTAACTAAA ATGACAAGAG AAGGTGTGAA AATGAAGCTA CCAAGATATG ATAAATCTGC
ATTCAGTGGC AGAGGTGACC GTGCTGATCC TTCAACATGG CCAGAAGTCG AAGGTCCCCT GAAGGTTGTG TTGTTCGAAG
GTTGGATGCT TGGTTTCAAG CCTCTTCCAG TTGAAGCTGT AAAGGATGTT GATCCCCAGT TAGAAATTGT AAATAAAAAC
CTTGAAGCTT ACTATGATGC ATGGGACAAA TACATTAAGT CATGGATAGT CATCAAGATT AAGGACCCAA ATTGTGTGTT
CCAATGGCGT TTGCAGGCTG AGATTGGCAT GAGGGAGGCC GGCAACCCTG GAATGACAGA TGAGGAGGTG AGAGATTTTG
TTTCACGGTA TCTGCCAGCA TACTATGCAT ACCTTCCTAC ACTTTACTCG GAGGGACCAA ATGGATCAGA TCCTCAACGT
CTCCTAACCA TTGAAATAGA TGAAGGGAGA AACCCCATCC TCGCTTCCTA AAGTAACTAT ATGATAGAGC TCTGCTGGTT
TTTCAATTCT TTGGGAATTT CTATGTCTAT TCAGCATTAA TTAGTTACTC CATTAGTGTA TCTAAGTTAA TGAATCTGCA
CTCTTTCCCT TGAAATGTAT AGAGAATATT TTCAGTAATA CACAACGGCT AATGCTTTCT GGTTGCTGTC ATTTGATCAG
ATAGAGTTAC ATACATTTTT ATTTTTGCTC AGAAAATCAT GGTTGTGATC ACACCAGTGA CTTCAATAGT ACACTATGCG
CTGCTGCACA TGATTTATGT AACAGTCATA ACGAATCATT TTATTCTTGA AGGAGATATC ATAAAAACAA AAAACAATTG
AAGTGCACAA TTATACAGAA GATCACTCCT TATTGGCTTC CAGAATCATC ATTTCATACA ACAAAGTAAG GATGAAACAT
AAACTTGACA ATCGTCTCTT GGAAATTAGA CCATCTAGGG ACAGCAACAG CAGGTGCGTT CTGAGCAGCA CCTACAACTC
TCATAACAGC AAAAGCAGCA ACAGAGTGTG TACAAACTGG ATCAGAGAAT GAACTGATCA GGGATAAAAA AAACAGAGAA
TTGTGGAAGA ATAGAAGAGA ATTGAAAACT AAAGAGGTAC CCACAAAGCA TAGAAGCTTT CCTTCTCCTC ACGACCCGTC
TGAGCGTGAT CATAGTATAT CTTCTGCTGT GCTGGTGCAG ACTGCGTCAT ATTTTTGGAT TTGAGTTTAG TTGAGTTGAT
GATGTTTCTT CCAACAGTGG TAGATCATGT AGTTTATCTA AAGCTCAAGC ACAGAAAGTT TCTTGAACAT GCTTATGGCC
TCTATAGCCA GCCATCCAAT ACAAAAAGCC TCTCCCTTTT CCTTTCTTGC CACTCATTTA TTATGGTAGT TAGTAGAAAG
GAATTGGTTG GCTTCACTGG CTGGAAAAGT GATGAAACCA ACCCCAAAAA GGTGGGGATG ATCACATTCC AACAAACACT
GAAAATATCA TTCAGTTATA GGTTATTTAT AAGGGTACTA ATCTGTTTAG ACGGTAGGAA AATGTCATAT TTGTTGGATC
GACAAAGGAG GAGGTTAACT GGAAAGATAC AACACTAATG AGATCTAAGT CCAATCACA

>Vigan.07G017700.01
ATGGCGACTC TGAATCTGTT CTCTCAGCCA TGGCAACCCA CAATTTCACC TTCTTTCTTC TGTTGTTCTA ATTCAAACAA
CAACATTTCC TATGCTTATC AAAATCATAA TATCATTTCC AACAATTCTA AATTTCATTT CTTTTCCAAT TCTCGTCAAT
TCTCTGTTCT TTCTCAATTC TCCTCTCACT CCTCAAAGTC AGGCAGTGGA AGTTCATGGT TGCAAAACAG TTCCTTTGCT
TCTGGCATTG AGTACAGGAA GCGTCCTCTA TATTCTGTAT TTCCAACAAA ACCTGCTCAA GTTTCCTCTG TGGAAGACCT
CTATCAGTTT ATTTGCTCGG GACCTCTGCT TGACAAAATA GGCCTCACAC AAGAGCAGGT GGCTGAGTCC ATTGATAACT
GGTTACTGTA TGGCCGGTAC CTATGCAGAT TGTTTCAGCT TAATGAATTG TACCTTACAG AGCCTCAAAA GGCTAGGATT
TATCACTACT ATGTACCAGT CTTTCTCTGG TGTGAACAAC AGATCGCGGA GCATCAGTCC AAATTCAAAG ATGGAGAAGA
AATTCCTCCT TTGGTGATTG GTTTCAGTGC CCCTCAAGGC TGTGGGAAGA CAACCCTTGT CTTTGCTCTT GACTATCTTT
TTGAAGTGAT TGGCAGGAAG TCTGCCACAG TATCTATAGA TGATTTTTAT TTGACTGCTG AAGGTCAGAC TAAACTAAGA
GAAGCTAATC CAGGAAATGC ACTTCTTGAG TATCGCGGAA ATGCAGGAAG CCATGATCTT GCTCTTTCTG TTGAAACTCT
GACAGCTTTA ACTAAAATGA CAAGAGAAGG TGTGAAAATG AAGCTACCAA GATATGATAA ATCTGCATTC AGTGGCAGAG
GTGACCGTGC TGATCCTTCA ACATGGCCAG AAGTCGAAGG TCCCCTGAAG GTTGTGTTGT TCGAAGGTTG GATGCTTGGT
TTCAAGCCTC TTCCAGTTGA AGCTGTAAAG GATGTTGATC CCCAGTTAGA AATTGTAAAT AAAAACCTTG AAGCTTACTA
TGATGCATGG GACAAATACA TTAAGTCATG GATAGTCATC AAGATTAAGG ACCCAAATTG TGTGTTCCAA TGGCGTTTGC
AGGCTGAGAT TGGCATGAGG GAGGCCGGCA ACCCTGGAAT GACAGATGAG GAGGTGAGAG ATTTTGTTTC ACGGTATCTG
CCAGCATACT ATGCATACCT TCCTACACTT TACTCGGAGG GACCAAATGG ATCAGATCCT CAACGTCTCC TAACCATTGA
AATAGATGAA GGGAGAAACC CCATCCTCGC TTCCTAA

>Vigan.07G017700.01
MATLNLFSQP WQPTISPSFF CCSNSNNNIS YAYQNHNIIS NNSKFHFFSN SRQFSVLSQF SSHSSKSGSG SSWLQNSSFA
SGIEYRKRPL YSVFPTKPAQ VSSVEDLYQF ICSGPLLDKI GLTQEQVAES IDNWLLYGRY LCRLFQLNEL YLTEPQKARI
YHYYVPVFLW CEQQIAEHQS KFKDGEEIPP LVIGFSAPQG CGKTTLVFAL DYLFEVIGRK SATVSIDDFY LTAEGQTKLR
EANPGNALLE YRGNAGSHDL ALSVETLTAL TKMTREGVKM KLPRYDKSAF SGRGDRADPS TWPEVEGPLK VVLFEGWMLG
FKPLPVEAVK DVDPQLEIVN KNLEAYYDAW DKYIKSWIVI KIKDPNCVFQ WRLQAEIGMR EAGNPGMTDE EVRDFVSRYL
PAYYAYLPTL YSEGPNGSDP QRLLTIEIDE GRNPILAS*