GBrowse Details

Vigan.07G017900.01

Basic Information:
Name: Vigan.07G017900.01
Multiple alignment
Variant Information
Position: Chr07:1184027..1185602 (- strand)
Length: 1576
Functional Information:
Description: Similar to Auxin-induced protein. [V7BXN7, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.20,3.04,16.50,40.19,2.69,30.16,0.94,18.93
Automatic updates:
Name: NM_001248140 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500488 (LOC100500488), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1184027..1184417 (- strand)
Length: 391
Type: three_prime_UTR
Position: Chr07:1184418..1184529 (- strand)
Length: 112
Type: CDS
Position: Chr07:1184650..1184764 (- strand)
Length: 115
Type: CDS
Position: Chr07:1184861..1185042 (- strand)
Length: 182
Type: CDS
Position: Chr07:1185259..1185431 (- strand)
Length: 173
Type: CDS
Position: Chr07:1185432..1185602 (- strand)
Length: 171
Type: five_prime_UTR


>Vigan.07G017900.01
AACAAAGTCT CAAATATCAA ACACTTTGGT CTCTCTCTTC CAAATCATTG AGACAAAACG AAAGAGTTGG TCATAGCAGC
GAACAGGGAA AACCGGAAAA GCCGCTCAGG ACTAAGGAAC CCGAGTTTGA ACGTTGAAAT TGCGTCGCGC GTGTGAGTGT
TTTCGAGAGC AATGTGGTCA CAATCACAAA GCAGCATCCA CTCGTCGGAA TCGGACGCCG TTGATTGTAA CTTGAAGGAG
ACGGAGCTCA CGCTGGGACT TCCCGGTACC AAACGTTCCT TCTCCGACAC CGTTGATCTT CATCTTGCCA CTTCGCTAAA
TAAATCCAAA CTCCCAACAC CAAAGGAACA AGTGGTGGGG TGGCCGCCGG TGAGGGCAAG CAGGAAGAAT GCTATGAAGA
GTTGCAAGTT CGTGAAGGTG GCTGTGGACG GAGCTCCTTA TCTACGAAAA GTGGATCTTG AATTGTACGA CAGTTACGAA
CATTTGATGA CAGAATTAGA GACCATGTTT TGTGGCTTAG ACATTCGCAA TCATTTGATG AATGAGAGGA AACTGATGGA
GTCTGGAAAT GGGATTGAAT ACATGCCCAC CTACGAGGAC AAAGATGGTG ATTGGATGTT GGTCGGGGAT GTACCATGGA
AGATGTTTGT TGAATCATGC AAGAGGATAA GGCTTATGAT TAGCTCAGAG GCTATTGGCC TAGGTTCGTT GTTTTCTATA
ATATATCTAT TGTGCAGTAA AAGTATACGA TGATTCTGGT TTTCTGATGT ACTTATAATA ATGGTGCAGG TCCGAGATCT
AGTTCAAAAT GTTCGGGTTC CACCTAGAAG AATATATATT AGTGTAATAA TAACGATAAT TAAGCACTTG GAAAGTATGA
TGAAATATGT ATCCATGGTG CTTTTGTATA TGTCTCCTTT AATTTAGCAC CTCTTAGTTT AAAAAAACGT AGAACTGATC
TATATATTAG TGAGAAAATA AATAAGGGAG GTTGGCATGT AATCAAGATT ATGATCATGG ATCGTTATAA GAGTAAGCTT
GTGTAATGTA TTGTAATGGC TTTGGCTTTG GCTTTGTAAC TCATCATGTA TCCCGATTTT GCAGTTTAGA TCCATTATTC
AATTATCATT TAGTTTCCAC TCCA

>Vigan.07G017900.01
ATGTGGTCAC AATCACAAAG CAGCATCCAC TCGTCGGAAT CGGACGCCGT TGATTGTAAC TTGAAGGAGA CGGAGCTCAC
GCTGGGACTT CCCGGTACCA AACGTTCCTT CTCCGACACC GTTGATCTTC ATCTTGCCAC TTCGCTAAAT AAATCCAAAC
TCCCAACACC AAAGGAACAA GTGGTGGGGT GGCCGCCGGT GAGGGCAAGC AGGAAGAATG CTATGAAGAG TTGCAAGTTC
GTGAAGGTGG CTGTGGACGG AGCTCCTTAT CTACGAAAAG TGGATCTTGA ATTGTACGAC AGTTACGAAC ATTTGATGAC
AGAATTAGAG ACCATGTTTT GTGGCTTAGA CATTCGCAAT CATTTGATGA ATGAGAGGAA ACTGATGGAG TCTGGAAATG
GGATTGAATA CATGCCCACC TACGAGGACA AAGATGGTGA TTGGATGTTG GTCGGGGATG TACCATGGAA GATGTTTGTT
GAATCATGCA AGAGGATAAG GCTTATGATT AGCTCAGAGG CTATTGGCCT AGGTTCGTTG TTTTCTATAA TATATCTATT
GTGCAGTAAA AGTATACGAT GA

>Vigan.07G017900.01
MWSQSQSSIH SSESDAVDCN LKETELTLGL PGTKRSFSDT VDLHLATSLN KSKLPTPKEQ VVGWPPVRAS RKNAMKSCKF
VKVAVDGAPY LRKVDLELYD SYEHLMTELE TMFCGLDIRN HLMNERKLME SGNGIEYMPT YEDKDGDWML VGDVPWKMFV
ESCKRIRLMI SSEAIGLGSL FSIIYLLCSK SIR*