GBrowse Details

Vigan.07G018000.01

Basic Information:
Name: Vigan.07G018000.01
Multiple alignment
Variant Information
Position: Chr07:1192873..1195736 (- strand)
Length: 2864
Functional Information:
Description: Similar to Auxin-induced protein 22C. [O24541, Vigna radiata var. radiata]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.04,5.92,47.19,8.66,0.42,7.65,4.03,69.58
Automatic updates:
Name: NM_001376198 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata auxin-induced protein 22C (AUX22C), mRNA.
PubMed ID: 26177103 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:1192873..1193135 (- strand)
Length: 263
Type: three_prime_UTR
Position: Chr07:1193136..1193250 (- strand)
Length: 115
Type: CDS
Position: Chr07:1194356..1194449 (- strand)
Length: 94
Type: CDS
Position: Chr07:1195111..1195465 (- strand)
Length: 355
Type: CDS
Position: Chr07:1195466..1195736 (- strand)
Length: 271
Type: five_prime_UTR


>Vigan.07G018000.01
TCCCAGTAAG CAGATCAGAC GGACAGGATG AAATGGAAGG AAATGAGAAG TGGTATAATA TGTCTCCATG CCTTGTCCAC
CTTATGCTGC TTCTCTGTAA TGGTTTTTGC GGGGGAACAT TTCGTCCCCA CATTTGTTTC TCATCTCACC GACCACCTCC
TACTTCACCC TCTCATGCTT CAACTCCTTT TTATATATAT ATACACACAC TTGACAACCT CTTTTCTTCA TACACTACCC
TTTTCTTTCG TTAATTACTT TGCCTTTTTC AATGGAGAAA GAAGATCTTG GCCTTGAAAT CACCGAGCTC CGGTTGGGCC
TTCCCGGCGC CGCTGCGGAG AACAACACCG ACAAGGACAA GAATAAGAAC AAAAAGAGGG TCTTCTCCGA CATTGAAGGT
GAAAACAGCT CCTCTGAAGA TGGCAAAAAA GAAACCAAGA ATCAAGTTGT CGGGTGGCCT CCGGTTTGCT CCTACCGCAA
GAAGAACACC GTCAATGAAC CTAAACTCTA CGTTAAAGTC AGCATGGACG GCGCTCCTTT CTTGCGTAAA ATCGATTTAG
CCATGCACAA GGGATACTCC GACTTGGCCT TCGCCTTGGA CAAGTTCTTC GGTTGCTACG GAATCGGCGA AGCGTTGAAG
GATGCGGAAA ATGCTGAACA CGTTCCCATA TACGAGGACA AAGATGGCGA CTGGATGCTG GTTGGAGATG TTCCTTGGGA
GATGTTTAGG GAGTCATGCA AGAGATTGAG GATTATGAAG AGATCAGATG CAAAGGGGTT CGATCTGCAG CCAAAAGGGT
CTTTAAAGGG ATTCATAGAA GGCGTGAGAA AATGAAAAGC ATAGATAAAG AAGCAAAGAA GATAGGCTTC TAATTGATAT
GTCGTACACG TTTTGAAGAC AAAACAAGTT TCATATGTTG TCGTTTTATT ATATTTGAGG AAGCAACATT TTATAGTATG
GTGCATGAAC CAGACTTGTG TCTATGATAA GGCCTAAGAA TGCTGTTTAA TGAAATAGGG ATTCAAAAAC TCATCGTTTT
AGTATATGTC TTGTCATATT TGTTAATATT TTGCAAATTA CACCAAACTT ATTGTCCA

>Vigan.07G018000.01
ATGGAGAAAG AAGATCTTGG CCTTGAAATC ACCGAGCTCC GGTTGGGCCT TCCCGGCGCC GCTGCGGAGA ACAACACCGA
CAAGGACAAG AATAAGAACA AAAAGAGGGT CTTCTCCGAC ATTGAAGGTG AAAACAGCTC CTCTGAAGAT GGCAAAAAAG
AAACCAAGAA TCAAGTTGTC GGGTGGCCTC CGGTTTGCTC CTACCGCAAG AAGAACACCG TCAATGAACC TAAACTCTAC
GTTAAAGTCA GCATGGACGG CGCTCCTTTC TTGCGTAAAA TCGATTTAGC CATGCACAAG GGATACTCCG ACTTGGCCTT
CGCCTTGGAC AAGTTCTTCG GTTGCTACGG AATCGGCGAA GCGTTGAAGG ATGCGGAAAA TGCTGAACAC GTTCCCATAT
ACGAGGACAA AGATGGCGAC TGGATGCTGG TTGGAGATGT TCCTTGGGAG ATGTTTAGGG AGTCATGCAA GAGATTGAGG
ATTATGAAGA GATCAGATGC AAAGGGGTTC GATCTGCAGC CAAAAGGGTC TTTAAAGGGA TTCATAGAAG GCGTGAGAAA
ATGA

>Vigan.07G018000.01
MEKEDLGLEI TELRLGLPGA AAENNTDKDK NKNKKRVFSD IEGENSSSED GKKETKNQVV GWPPVCSYRK KNTVNEPKLY
VKVSMDGAPF LRKIDLAMHK GYSDLAFALD KFFGCYGIGE ALKDAENAEH VPIYEDKDGD WMLVGDVPWE MFRESCKRLR
IMKRSDAKGF DLQPKGSLKG FIEGVRK*