GBrowse Details

Vigan.07G018300.01

Basic Information:
Name: Vigan.07G018300.01
Multiple alignment
Variant Information
Position: Chr07:1233443..1237443 (- strand)
Length: 4001
Functional Information:
Description: Similar to DNA repair protein XRCC1-like. [XP_004486715.1, Cicer arietinum]
InterPro: BRCT domain (IPR001357)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.76,36.64,7.06,6.97,8.70,7.34,2.58,5.69
Arabidopsis thaliana homolog: AT1G80420.1
Automatic updates:
Name: NM_001255016 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100818448 (LOC100818448), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1233443..1233660 (- strand)
Length: 218
Type: three_prime_UTR
Position: Chr07:1233661..1234002 (- strand)
Length: 342
Type: CDS
Position: Chr07:1234694..1234780 (- strand)
Length: 87
Type: CDS
Position: Chr07:1234972..1235082 (- strand)
Length: 111
Type: CDS
Position: Chr07:1235184..1235269 (- strand)
Length: 86
Type: CDS
Position: Chr07:1235918..1236029 (- strand)
Length: 112
Type: CDS
Position: Chr07:1236666..1236854 (- strand)
Length: 189
Type: CDS
Position: Chr07:1236933..1237301 (- strand)
Length: 369
Type: CDS
Position: Chr07:1237302..1237443 (- strand)
Length: 142
Type: five_prime_UTR


>Vigan.07G018300.01
ACGCAACAAA AACGCAGTAC CAAAAGTGGG AGGAGGAGGA AGCGAAGAGT ATTATTATTA TTATTTTTTT TGTTCATTCA
TTTGTCTCCC AATATTTTTT ATTTATTCAT CTCAATAGGC ACGCACATTC AAATTCTCTT GCATGTTTCT GTTCACCGAT
GAAGTTTCTG ATCAATTTAC GAATTTTATT CTGACCCCAA ACGCAGGCTT CTTCACTAAA ACTTCGGTGT TTTTCGAATT
TGGTGTTTTT GGTACACTAC GCATAGGTAG TTCTTCTACT ATGTCTGGTG CTAAAAGAAG TGCCAACGAC AGCGGTTCCA
AGCGGAGCCT ACCGTCGTGG ACATGTTCAA AGAAGAACGA GAGCGAAAAC AGTGAGAAGA AACTAACTTT CGACGGCAAA
GGTGAGAAAT CCAATGAGGG TGAGGCACCC AAGATGGGCA AAGTTCAAAA TGAGAGTGGT GGAAAATCTT CTGCCTCAAG
TTTGGAGTTT AGAAGCTTCA ATAAACTTCT GGAAGGGGTG GTTTTTGTGC TCTCAGGGTT TGTGAATCCG GAGAGGGGCA
TGTTGAGGTC ACGAGCAATG GAAATGGGGG CACAATATCA GCCTGATTGG AACTCTGATT GCACTCTCTT GGTTTGTGCA
TTTCCAAATA CCCCTAAGTT TAGACAAGTT GAAGCTGATT GTGGAACCAT TGTATCCAAG GATTGGATAA TAGATTGTTA
CACACAGAGG AAGCTGATTG AGATTGACAA TTACCTTCTT CATGCTGGGA AACCATGGCG TAAAGGAAAT GTTTCAGGAG
AAGTCAATGA AGATAAAATA CCATCTGTAC CCAAAAAGTC ACCGAAGCAT GTTGATGGAG AACAGCCTTC AAAGTCAACA
GCCTCCGTAA AATCAAAGGG AAAAGGCACT GATATTTCTA GGAAATGCTT TGAGCCTTCG GAAGTGAAGG AGTGGGCCAT
TGATGACTTG AATAAAACAA TTCAGTGGCT GGAAAGTCAA GAAGAAAAGC CAGATCCAAA TGAGGTGACG AAAATAGCTG
CAGAGGGAAT TCTAACTTGT TTGCAAGATG CAATTCGTTC TATAGAGGAA AAACAGGATA TCCGAAAAGG AACTGAGGAC
TGGATGTTCT TGCCTCGTGT AGTTGACGAG CTTGCAAAGT TGGATGTAGT TGGAAACAAA AAGACTTTAT TGTCAAAGGA
AGATCTTCAC AGAGAGGCTT TGGATTGTAA GCGAATTTAC GAGGAGGAAC TAAGTAGTTT AGATCATCAA AGGAAGAAAA
ATTCAAAGGT AAATAAAGAA CAGACGAGCA AAACTGGAAG AACAAATGCC ATGTCTTCTG ATGCAGTTGA ATATGATAGT
GATGATACAA TTGAGATGAC AGAACAAGAA ATAGACCTTG CATATAAAAC TTTGTCCTCT AACATCGGCC ACTTGTGAAT
TCTGAATGAA CTTGTTTCTT TTGGGGAGAA AGGAAGTTGA TTTGGTTTAG CTAGATTTTT CTTTGAATAT TTTACTGTGT
ATGTCACAAA GTCTTTGTTA TTGTCAGCCT TAGATGTTCA CCTGTTTTTG CTACTTCCAT GCATATTACT TTTCTCAGTT
CCCATTTTTG TTCTAATATC GGAGTTGGGT AAATCAAAAC ACAACTTTAC TTGGAA

>Vigan.07G018300.01
ATGTTTCTGT TCACCGATGA AGTTTCTGAT CAATTTACGA ATTTTATTCT GACCCCAAAC GCAGGCTTCT TCACTAAAAC
TTCGGTGTTT TTCGAATTTG GTGTTTTTGG TACACTACGC ATAGGTAGTT CTTCTACTAT GTCTGGTGCT AAAAGAAGTG
CCAACGACAG CGGTTCCAAG CGGAGCCTAC CGTCGTGGAC ATGTTCAAAG AAGAACGAGA GCGAAAACAG TGAGAAGAAA
CTAACTTTCG ACGGCAAAGG TGAGAAATCC AATGAGGGTG AGGCACCCAA GATGGGCAAA GTTCAAAATG AGAGTGGTGG
AAAATCTTCT GCCTCAAGTT TGGAGTTTAG AAGCTTCAAT AAACTTCTGG AAGGGGTGGT TTTTGTGCTC TCAGGGTTTG
TGAATCCGGA GAGGGGCATG TTGAGGTCAC GAGCAATGGA AATGGGGGCA CAATATCAGC CTGATTGGAA CTCTGATTGC
ACTCTCTTGG TTTGTGCATT TCCAAATACC CCTAAGTTTA GACAAGTTGA AGCTGATTGT GGAACCATTG TATCCAAGGA
TTGGATAATA GATTGTTACA CACAGAGGAA GCTGATTGAG ATTGACAATT ACCTTCTTCA TGCTGGGAAA CCATGGCGTA
AAGGAAATGT TTCAGGAGAA GTCAATGAAG ATAAAATACC ATCTGTACCC AAAAAGTCAC CGAAGCATGT TGATGGAGAA
CAGCCTTCAA AGTCAACAGC CTCCGTAAAA TCAAAGGGAA AAGGCACTGA TATTTCTAGG AAATGCTTTG AGCCTTCGGA
AGTGAAGGAG TGGGCCATTG ATGACTTGAA TAAAACAATT CAGTGGCTGG AAAGTCAAGA AGAAAAGCCA GATCCAAATG
AGGTGACGAA AATAGCTGCA GAGGGAATTC TAACTTGTTT GCAAGATGCA ATTCGTTCTA TAGAGGAAAA ACAGGATATC
CGAAAAGGAA CTGAGGACTG GATGTTCTTG CCTCGTGTAG TTGACGAGCT TGCAAAGTTG GATGTAGTTG GAAACAAAAA
GACTTTATTG TCAAAGGAAG ATCTTCACAG AGAGGCTTTG GATTGTAAGC GAATTTACGA GGAGGAACTA AGTAGTTTAG
ATCATCAAAG GAAGAAAAAT TCAAAGGTAA ATAAAGAACA GACGAGCAAA ACTGGAAGAA CAAATGCCAT GTCTTCTGAT
GCAGTTGAAT ATGATAGTGA TGATACAATT GAGATGACAG AACAAGAAAT AGACCTTGCA TATAAAACTT TGTCCTCTAA
CATCGGCCAC TTGTGA

>Vigan.07G018300.01
MFLFTDEVSD QFTNFILTPN AGFFTKTSVF FEFGVFGTLR IGSSSTMSGA KRSANDSGSK RSLPSWTCSK KNESENSEKK
LTFDGKGEKS NEGEAPKMGK VQNESGGKSS ASSLEFRSFN KLLEGVVFVL SGFVNPERGM LRSRAMEMGA QYQPDWNSDC
TLLVCAFPNT PKFRQVEADC GTIVSKDWII DCYTQRKLIE IDNYLLHAGK PWRKGNVSGE VNEDKIPSVP KKSPKHVDGE
QPSKSTASVK SKGKGTDISR KCFEPSEVKE WAIDDLNKTI QWLESQEEKP DPNEVTKIAA EGILTCLQDA IRSIEEKQDI
RKGTEDWMFL PRVVDELAKL DVVGNKKTLL SKEDLHREAL DCKRIYEEEL SSLDHQRKKN SKVNKEQTSK TGRTNAMSSD
AVEYDSDDTI EMTEQEIDLA YKTLSSNIGH L*