VIGGS:GBrowse

Vigan.07G021300.01

Basic Information:

Name:	Vigan.07G021300.01 Multiple alignment Variant Information
Position:	Chr07:1469006..1470110 (+ strand)
Length:	1105

Functional Information:

Description:	Similar to Cytoplasmic dynein light chain, putative. [B9RQL2, Ricinus communis]
GO:	Biological Process: microtubule-based process (GO:0007017)
GO:	Cellular Component: microtubule associated complex (GO:0005875)
InterPro:	Dynein light chain, type 1/2 (IPR001372)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.38,1.71,0.98,2.65,0.18,10.74,11.04,0.42
Arabidopsis thaliana homolog:	AT3G16120.1

Automatic updates:

Name:	NM_001253312 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative dynein light chain type 1 (LOC100808818), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:1469006..1469272 (+ strand)
Length:	267
Type:	five_prime_UTR

Position:	Chr07:1469273..1469458 (+ strand)
Length:	186
Type:	CDS

Position:	Chr07:1469632..1469790 (+ strand)
Length:	159
Type:	CDS

Position:	Chr07:1469791..1470110 (+ strand)
Length:	320
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G021300.01
CTGGCCAAAA TGACAAAACT GACAAAATTC CTTTTAATTA TGGCCTCACC AGCTTTATCC TTAGCTCCTC ACTCTTCTTT
CGCATCAATT TTCTCATCCT AGGACTCTAT GACTGAGTGA GTCACCACCA GAATGACAAA AAATCACGAG AGAGGGAGTT
ACATTCATGA ATGTTCATTT ATATAATAAG TCCAAAAATG TGAGGTAGCA GAAGTGAGTT TGGTACATGC CCCAGTGCCA
GCTTTATGAC ATCATATATA GAGTGATATG TTATTGCTAT TGCTCACTTT CTTGGAAAAG AGCAACGGTG AAAGCATGTT
GGAAGGTAAA GCTGTGATAG AGGATACTGA CATGCCCCTC AAGATGCAGA TCCAAGCCAT GGCATCTGCT TCTGAAGCTC
TTGATCTCTA TGATGTTTTG GATTGCACAT CCATTGCTGC CCACATTAAA AAGGAGTTTG ACACGAAGCA TGGTTCTGGA
TGGCAGTGTG TGGTGGGATC GAGTTTTGGG TGCTTTTTTA CCCATTCAAA GGGAACCTTC GTGTACTTTA CTCTGGAGAC
TCTCAATTTT CTCATCTTCA AAGGGGCTTC TTCTGATCAA GAACATATCT AGGCAAGTTA AATATATGCA GCAACTCTCG
AGTCATTTAT CGATTGGACC CTATTAACAT GTTTTGAAGG GTGCTGTGCA GGGTGATGAT GATGTTCTTT TTTATTTTGT
ATATAATTAT GATAAGTTCC TGTTCTTCAG TTCATCTTTT TTGTTGTTTT GGATAAGATC CCCTTAAATT TCTCTTCATA
TCGTGGATAT TATTTGTTCT TTCTCCAAAG AAAAAAGAAG AGTCGTGGCT ATACCAGAAA GAAGAAGATA AAGGATGAAG
TATTAATGGA ACTGAAATTA GATATGAAAA GAAAGTCTTG GATATTTTGT TT

[show][hide][copy]CDS

>Vigan.07G021300.01
ATGTTATTGC TATTGCTCAC TTTCTTGGAA AAGAGCAACG GTGAAAGCAT GTTGGAAGGT AAAGCTGTGA TAGAGGATAC
TGACATGCCC CTCAAGATGC AGATCCAAGC CATGGCATCT GCTTCTGAAG CTCTTGATCT CTATGATGTT TTGGATTGCA
CATCCATTGC TGCCCACATT AAAAAGGAGT TTGACACGAA GCATGGTTCT GGATGGCAGT GTGTGGTGGG ATCGAGTTTT
GGGTGCTTTT TTACCCATTC AAAGGGAACC TTCGTGTACT TTACTCTGGA GACTCTCAAT TTTCTCATCT TCAAAGGGGC
TTCTTCTGAT CAAGAACATA TCTAG

[show][hide][copy]PROTEIN

>Vigan.07G021300.01
MLLLLLTFLE KSNGESMLEG KAVIEDTDMP LKMQIQAMAS ASEALDLYDV LDCTSIAAHI KKEFDTKHGS GWQCVVGSSF
GCFFTHSKGT FVYFTLETLN FLIFKGASSD QEHI*