GBrowse Details

Vigan.07G021700.01

Basic Information:
Name: Vigan.07G021700.01
Multiple alignment
Variant Information
Position: Chr07:1483078..1488876 (- strand)
Length: 5799
Functional Information:
Description: Similar to Uncharacterized protein. [I1MCR0, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: lipid binding (GO:0008289)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Homeobox domain (IPR001356)
START domain (IPR002913)
Homeodomain-like (IPR009057)
Homeobox, conserved site (IPR017970)
START-like domain (IPR023393)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.88,9.27,16.50,2.87,0.13,3.08,0.25,2.41
Arabidopsis thaliana homolog: AT1G05230.1, AT1G79840.2, AT4G00730.1, AT4G04890.1, AT4G21750.1
Automatic updates:
Name: KT031171 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:1483078..1483408 (- strand)
Length: 331
Type: three_prime_UTR
Position: Chr07:1483409..1483789 (- strand)
Length: 381
Type: CDS
Position: Chr07:1483896..1483982 (- strand)
Length: 87
Type: CDS
Position: Chr07:1484086..1484357 (- strand)
Length: 272
Type: CDS
Position: Chr07:1484457..1484631 (- strand)
Length: 175
Type: CDS
Position: Chr07:1485015..1485224 (- strand)
Length: 210
Type: CDS
Position: Chr07:1486194..1486295 (- strand)
Length: 102
Type: CDS
Position: Chr07:1486447..1486821 (- strand)
Length: 375
Type: CDS
Position: Chr07:1486929..1487123 (- strand)
Length: 195
Type: CDS
Position: Chr07:1487254..1487371 (- strand)
Length: 118
Type: CDS
Position: Chr07:1488276..1488553 (- strand)
Length: 278
Type: CDS
Position: Chr07:1488677..1488760 (- strand)
Length: 84
Type: CDS
Position: Chr07:1488761..1488876 (- strand)
Length: 116
Type: five_prime_UTR


>Vigan.07G021700.01
TCTCTTTCTC TCTTTCTCTC TTCTTTCCCA CACAACACAA ACTCCACCAT TTTAATCTCT TCTTCCAACA CATTCTCCAT
TATTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTCCAATGG GCGCTGACAT GTCGAACAAT CCACCACCCA CTTCTCACGC
CAAAGACTTC TTTGCCTCCC CAGCTCTCTC TCTCAGCCTT GCTGGGATTT TTCGCCATGC CGGTGTGGCG GCGGAGGCCG
AAGCTGCCAC TTCGAACATG GAGGTGGAGG AGTGGGAAGA CGGGAGTGGA GGAGGTGAAA GGCTGGAAGA GATTAGCAGC
GAGAATTCCG GCCCCACGAG ATCCAGATCA GAGGATGATT TTGAAGGAGA AGGTGAACAC GAGGATGCTG ATGCTGATGC
TGACGGTGAC AGAAAGAAAA AGAAGAAGAG GAAGAAATAT CACAGACACA CTGCTGATCA GATCAGAGAA ATGGAAGCGC
TTTTCAAAGA GTCACCACAT CCTGATGAAA AGCAGAGGCA ACAATTAAGC AAGCAATTAG GCCTTGCTCC AAGGCAAGTC
AAGTTTTGGT TCCAAAATCG TCGAACCCAA ATCAAGGCAA TACAAGAGCG TCACGAAAAT TCTTTGTTGA AGTCAGAAAT
AGAGAAACTA AAGGAGAAAA ATAAAACCTT ACGAGAGACA ATAAACAAAG CATGTTGCCC CACCTGCGGC GTGCCCACCA
CAAGCAGAGA TGGAGCCATG CCGACCGAAG AACAACAACT ACGTATTGAA AATGCCAAAC TCAAAGCCGA GGTAGAGAAG
CTTCGAGCAG CTTTAGGGAA ATACGCACCT GGGTCAACGT CCCCTTCGTG TTCTTCTGGC CATGACCAAG AAAACAGAAG
CTCTTTGGAT TTTTACACTG GAATTTTCGG AATCGACAAT TCAAGGATAA TGGATATAGT CAACCAAGCA TTGGAGGAAC
TGATTAAGAT GGCTACCATG GGAGAACCAT TATGGCTACG TAGCTTCGAG ACTGGTCGCG AAATACTTAA CTACGACGAA
TATGTGAAGG AGTTTGCAGT TGAAAACTCA AGCAGTGGAA AGCCAAAGAG ATCCATTGAA GCCTCAAGAG ACACTGGAGT
TGTTTTTGTG GATCTCCCTC GGCTTGTCCA AAGTTTTCTA GATGTGAATC AATGGAAAGA AATGTTTCCA TGTTTGATAT
CTAAGGCAGC AACAGTCGAT GTTATATGCA ACGGAGAAGG TCCTAACAGG AATGGTGCAG TACAACTGAT GTTTGCTGAG
CTGCAAATGC TCACTCCGAT GGTGCCCACA AGAGAAGTCT ATTTTGTCCG TTTCTGCAAA CAGTTGAGTG CTGAGCAGTG
GGCAATCGTC GATGTATCCA TAGACAAAGT AGAAGACAAC ATTGACGCGT CCCTCGTGAA ATGCAGAAAA CGCCCTTCCG
GTTGCATTAT TGAGGACAAG TCCAATGGCC ACTGCAAAGT AATATGGGTG GAGCACTTGG AATGCCAGAA GAGTGCAGTT
CACTCCTTGT ATCGTACCAT TGTGAACAGT GGCCTAGCCT TTGGAGCAAG GCATTGGATT ACGACTCTAC AACTTCAATG
TGAGCGTCTG GTTTTTTTCA TGGCAACTAA TGTTCCCATG AAGGATTCAA CTGGTGTTGC CACATTGGCT GGGAGAAAAA
GCATTTTGAA GTTGGCACAA AGAATGACAT GGAGTTTCTG CCATGCAATT GGCGCATCAA GCTTCCACAC ATGGACTAAG
GTTACAAGCA AAAACGGGGA AGACATAAGG ATAAGTTCTA GAAAGAATTT GAACGATCCT GGTGAACCTC TTGGTTTGAT
ACTGTGCGCT GTTTGTTCTG TATGGTTGCC AGTCTCACAA AATGTTCTGT TTGATTTCTT GAGAGATGAA ACACGCCGAA
GTGAGTGGGA TATCATGTCA AGTGGTGGGA CAGTGCTGTC CATTGCAAAT TTATCCAAAG GACAAGACCG AGGCAATGCA
GTTACCATTC AAACAATTAA ATTGAAAGAA AACAGTGTGT GGATACTACA AGATAGCTGC ACAAATCCTT ATGAGTCAAT
GGTGGTATAT GCTTCTGTGG ACATTACTGG TATTCAGTCT GTGATGACAG GATGTGATTC AAGCAACCTT GCCATACTGC
CTTCGGGATT CTCTATAATT CCTGATGGCC TCGAGTCAAG ACCATTGGTG ATTACTTCAA GGCAGGAAGA GAAATATACC
GAAGGAGGAT CTTTGTTTAC AATGGCATTC CAGATCCTGA CTAATGCATC TCCCACAGCC AAGTTAACAG TGGAGGCTGT
GGACTCTGTC AACACTCTTG TATCTTGTAC ATTGAGAAAT ATCAGAACAT GCTTACAATG TGAAGAGGGC TAGTCAAAAT
CAGATAATCA ATTGATAGAG AGTCATAGAC AATAATCCGC AGTGATGATC TTAGACTCTC TATTTCTTTT TTGGATAGTA
TTCGGTTTGG CAAAAATAGC TTGCGTTTGT TTTATTCATT ATTCCATTAC CAAGGAGGCT TTGGTCAAGT ATGTATATCT
GTATCTGCAG TTCTGTAGGT AGAAAGAGAG ACAAAAAGCT TTTAGAATTT AGATTTTAAC TATGGCGTGT ATAGAATTAT
CATTTGTTAA TTCCTTATGC AGTTGGTTTT TTTTTTTGTA GCTATTTGAT TATTCATGCC TTACATGGTT TGGTTTGATG
GCTC

>Vigan.07G021700.01
ATGGGCGCTG ACATGTCGAA CAATCCACCA CCCACTTCTC ACGCCAAAGA CTTCTTTGCC TCCCCAGCTC TCTCTCTCAG
CCTTGCTGGG ATTTTTCGCC ATGCCGGTGT GGCGGCGGAG GCCGAAGCTG CCACTTCGAA CATGGAGGTG GAGGAGTGGG
AAGACGGGAG TGGAGGAGGT GAAAGGCTGG AAGAGATTAG CAGCGAGAAT TCCGGCCCCA CGAGATCCAG ATCAGAGGAT
GATTTTGAAG GAGAAGGTGA ACACGAGGAT GCTGATGCTG ATGCTGACGG TGACAGAAAG AAAAAGAAGA AGAGGAAGAA
ATATCACAGA CACACTGCTG ATCAGATCAG AGAAATGGAA GCGCTTTTCA AAGAGTCACC ACATCCTGAT GAAAAGCAGA
GGCAACAATT AAGCAAGCAA TTAGGCCTTG CTCCAAGGCA AGTCAAGTTT TGGTTCCAAA ATCGTCGAAC CCAAATCAAG
GCAATACAAG AGCGTCACGA AAATTCTTTG TTGAAGTCAG AAATAGAGAA ACTAAAGGAG AAAAATAAAA CCTTACGAGA
GACAATAAAC AAAGCATGTT GCCCCACCTG CGGCGTGCCC ACCACAAGCA GAGATGGAGC CATGCCGACC GAAGAACAAC
AACTACGTAT TGAAAATGCC AAACTCAAAG CCGAGGTAGA GAAGCTTCGA GCAGCTTTAG GGAAATACGC ACCTGGGTCA
ACGTCCCCTT CGTGTTCTTC TGGCCATGAC CAAGAAAACA GAAGCTCTTT GGATTTTTAC ACTGGAATTT TCGGAATCGA
CAATTCAAGG ATAATGGATA TAGTCAACCA AGCATTGGAG GAACTGATTA AGATGGCTAC CATGGGAGAA CCATTATGGC
TACGTAGCTT CGAGACTGGT CGCGAAATAC TTAACTACGA CGAATATGTG AAGGAGTTTG CAGTTGAAAA CTCAAGCAGT
GGAAAGCCAA AGAGATCCAT TGAAGCCTCA AGAGACACTG GAGTTGTTTT TGTGGATCTC CCTCGGCTTG TCCAAAGTTT
TCTAGATGTG AATCAATGGA AAGAAATGTT TCCATGTTTG ATATCTAAGG CAGCAACAGT CGATGTTATA TGCAACGGAG
AAGGTCCTAA CAGGAATGGT GCAGTACAAC TGATGTTTGC TGAGCTGCAA ATGCTCACTC CGATGGTGCC CACAAGAGAA
GTCTATTTTG TCCGTTTCTG CAAACAGTTG AGTGCTGAGC AGTGGGCAAT CGTCGATGTA TCCATAGACA AAGTAGAAGA
CAACATTGAC GCGTCCCTCG TGAAATGCAG AAAACGCCCT TCCGGTTGCA TTATTGAGGA CAAGTCCAAT GGCCACTGCA
AAGTAATATG GGTGGAGCAC TTGGAATGCC AGAAGAGTGC AGTTCACTCC TTGTATCGTA CCATTGTGAA CAGTGGCCTA
GCCTTTGGAG CAAGGCATTG GATTACGACT CTACAACTTC AATGTGAGCG TCTGGTTTTT TTCATGGCAA CTAATGTTCC
CATGAAGGAT TCAACTGGTG TTGCCACATT GGCTGGGAGA AAAAGCATTT TGAAGTTGGC ACAAAGAATG ACATGGAGTT
TCTGCCATGC AATTGGCGCA TCAAGCTTCC ACACATGGAC TAAGGTTACA AGCAAAAACG GGGAAGACAT AAGGATAAGT
TCTAGAAAGA ATTTGAACGA TCCTGGTGAA CCTCTTGGTT TGATACTGTG CGCTGTTTGT TCTGTATGGT TGCCAGTCTC
ACAAAATGTT CTGTTTGATT TCTTGAGAGA TGAAACACGC CGAAGTGAGT GGGATATCAT GTCAAGTGGT GGGACAGTGC
TGTCCATTGC AAATTTATCC AAAGGACAAG ACCGAGGCAA TGCAGTTACC ATTCAAACAA TTAAATTGAA AGAAAACAGT
GTGTGGATAC TACAAGATAG CTGCACAAAT CCTTATGAGT CAATGGTGGT ATATGCTTCT GTGGACATTA CTGGTATTCA
GTCTGTGATG ACAGGATGTG ATTCAAGCAA CCTTGCCATA CTGCCTTCGG GATTCTCTAT AATTCCTGAT GGCCTCGAGT
CAAGACCATT GGTGATTACT TCAAGGCAGG AAGAGAAATA TACCGAAGGA GGATCTTTGT TTACAATGGC ATTCCAGATC
CTGACTAATG CATCTCCCAC AGCCAAGTTA ACAGTGGAGG CTGTGGACTC TGTCAACACT CTTGTATCTT GTACATTGAG
AAATATCAGA ACATGCTTAC AATGTGAAGA GGGCTAG

>Vigan.07G021700.01
MGADMSNNPP PTSHAKDFFA SPALSLSLAG IFRHAGVAAE AEAATSNMEV EEWEDGSGGG ERLEEISSEN SGPTRSRSED
DFEGEGEHED ADADADGDRK KKKKRKKYHR HTADQIREME ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQIK
AIQERHENSL LKSEIEKLKE KNKTLRETIN KACCPTCGVP TTSRDGAMPT EEQQLRIENA KLKAEVEKLR AALGKYAPGS
TSPSCSSGHD QENRSSLDFY TGIFGIDNSR IMDIVNQALE ELIKMATMGE PLWLRSFETG REILNYDEYV KEFAVENSSS
GKPKRSIEAS RDTGVVFVDL PRLVQSFLDV NQWKEMFPCL ISKAATVDVI CNGEGPNRNG AVQLMFAELQ MLTPMVPTRE
VYFVRFCKQL SAEQWAIVDV SIDKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKSAVHS LYRTIVNSGL
AFGARHWITT LQLQCERLVF FMATNVPMKD STGVATLAGR KSILKLAQRM TWSFCHAIGA SSFHTWTKVT SKNGEDIRIS
SRKNLNDPGE PLGLILCAVC SVWLPVSQNV LFDFLRDETR RSEWDIMSSG GTVLSIANLS KGQDRGNAVT IQTIKLKENS
VWILQDSCTN PYESMVVYAS VDITGIQSVM TGCDSSNLAI LPSGFSIIPD GLESRPLVIT SRQEEKYTEG GSLFTMAFQI
LTNASPTAKL TVEAVDSVNT LVSCTLRNIR TCLQCEEG*