GBrowse Details

Vigan.07G025200.01

Basic Information:
Name: Vigan.07G025200.01
Multiple alignment
Variant Information
Position: Chr07:1795225..1799920 (+ strand)
Length: 4696
Functional Information:
Description: Similar to MYB transcription factor MYB62 isoform X1. [XP_006593489.1, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:273.71,67.12,10.21,10.00,2.77,11.64,22.13,4.13
Arabidopsis thaliana homolog: AT3G16350.1
Automatic updates:
Name: NM_001248772 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB62 (MYB62), mRNA.
PubMed ID: 22836494 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:1795225..1795629 (+ strand)
Length: 405
Type: five_prime_UTR
Position: Chr07:1795630..1795948 (+ strand)
Length: 319
Type: CDS
Position: Chr07:1798145..1798353 (+ strand)
Length: 209
Type: CDS
Position: Chr07:1798830..1799360 (+ strand)
Length: 531
Type: CDS
Position: Chr07:1799361..1799920 (+ strand)
Length: 560
Type: three_prime_UTR


>Vigan.07G025200.01
AAGGAATTAA TTGAAGCCTT GGGAGTGATG AGAGGATGAT GTATATAGAG AGATGGAAAG AAAAGGAAAA AGGAAGGAAG
AGGAACCAGC GATGGAACGC GTTCCACTGA CACAAAATGA TAAAAGAGGC GTTAATTTAG AATTCCAGAT TTAACCTCGA
GGATATTCCT AAAACCCGGA ATTATCCATC ACCACCACCA CCCTGTTCTG TGTTTTACCT TAATTAACCA AACACATGCA
TTCTTTCCAT ATCCCTTCTC TCGATTCATA GTTCCAATTT CCTTTTCCAT AACCATTTTC TATTTTCCTT TCCTCTCCTT
ATTCCTCTTC TTCTCTTTTC TTCACTTTCT CTCTCCATCC ATCCCTCCCT CCCTCCCTGG ACCGAGTCAC GCGGCGAGGA
TCGGCATGAC TCGGCGGTGC TCCCACTGCA GCAACAACGG CCACAACTCC CGCACGTGCC CGTCGCGGGG GGTGGGCGCC
GGCGTCAAGC TGTTCGGGGT GAGACTGACG GATGGATCAA TCATAAAGAA AAGTGCCAGT ATGGGAAACC TTAACCTCGC
CTCCACACAC CACCATTCTT CTCCCTCTTC CTCCAACCTC GCCGCCTCCT CTCCCAATCC AAGCTCTCCC TGCTCCGACC
CGCCTCATGA GCCCCAAGGT TACTTGTCCG ACGACCCCGC CCATATCTCC ACCTTCGCTA ACCGCCGCGG TGAAAGAAAA
AAAGGTGTTG CGTGGACTGA AGAAGAGCAT AGGCTGTTCT TAATTGGTCT GCAGAAGCTG GGCAAAGGAG ACTGGCGTGG
CATAGCACGT AATTTTGTCG TAACAAGGAC CCCTACTCAA GTAGCAAGTC ATGCCCAGAA GTATTTTATC CGACAAAGTC
ATGCTACCAG GAGAAAGAGA CGTTCCAGCC TTTTTGACAT GGTTCCGGAT ATGACTTCAG ATCCACCTTC TGTGCCAGAA
GAACAAGTTC TGCTTCCACC TTCTGAGAAC TCGCAACCTT GTACTGGAAA ATCGCAGCCT TCACTAAATC TCTCCCTCAA
ATCAGAATTT GAACCCATGG AAACTTCTCA AGAAAACATG GAACAGACCA ATGAAACTAT GATGGGATCA AACGGACTGA
CATCAATGGC TCCTCATGGA TTCTTCCCCA CTTATTTACC TGTTCCATTT CCCATATGGC CATCAGCTGC AGCTCCTTTT
GAAGAAGTTA AGGGAGGAGA GACATCCCAT CATCAGGTCC ACAGGCCAAT CCCAGTCATT GCCAAGGAAC CTGTCAATGT
TGACGAACTC GTGGGAATGT CTCATCTCAG CATTGGGGAA ACACAGGTAC GTGATAGAGA GCCTTCCCCA CTTTCCTTAA
AGTTGTTAGG GGAACCCTCT AGGCAGTCAG CATTCCATGC AAATGCTCCA GTTGGTGGTT CCGATTTAAA AACTGGCAAG
AACAAAGCAA TTCAAGCGGT TTGAGCTTTT AAGGTCTGGT GAAGATAGCA GCAGTAATTA AGCCTTCTTT TGCTCTTCTT
TTCGTTTGTA CTATCATATA TATTTTTTTT TTCTGAGCCC TAGTGTTTAA CCTTCCAATC AGTAGAGCAA GTTATATGGT
GGCATGTAGC TCAGGTTAGA TCAATTATTG GCAAATATTT ATTCTTTCTA ACTGTAAACA AATGAAGCTT TAATAATCAA
ATATCACCAG GAGGTCTTTG TACCTCTAGG TTTGGTTATT TAGGGTTAAT TTTGATGAAG ATTTCAACAA ATAGTTACAC
CGATTGACCA AAAACAAAAT AAAGTGAATT ATGTAAAGTG AGTCTAATGT TTAGTAGTTG TTAAAATTAA TTTATGCATC
TTAATTTTTT GTACTCATTT AAATCTATAC ATACATTTAA AAATACTTAG GAATCAAATG TTTATTTTAA TTAAACGGTT
CTTATGAGTT AAAAAGTTAA TCCAAATTGA GTCATAATTG TTGTCTAGCC AGTGTTCCAG CTCTCCCGCA ATGTGTTGTG
TGATGTACCA ATTCGTATGT TTTG

>Vigan.07G025200.01
ATGACTCGGC GGTGCTCCCA CTGCAGCAAC AACGGCCACA ACTCCCGCAC GTGCCCGTCG CGGGGGGTGG GCGCCGGCGT
CAAGCTGTTC GGGGTGAGAC TGACGGATGG ATCAATCATA AAGAAAAGTG CCAGTATGGG AAACCTTAAC CTCGCCTCCA
CACACCACCA TTCTTCTCCC TCTTCCTCCA ACCTCGCCGC CTCCTCTCCC AATCCAAGCT CTCCCTGCTC CGACCCGCCT
CATGAGCCCC AAGGTTACTT GTCCGACGAC CCCGCCCATA TCTCCACCTT CGCTAACCGC CGCGGTGAAA GAAAAAAAGG
TGTTGCGTGG ACTGAAGAAG AGCATAGGCT GTTCTTAATT GGTCTGCAGA AGCTGGGCAA AGGAGACTGG CGTGGCATAG
CACGTAATTT TGTCGTAACA AGGACCCCTA CTCAAGTAGC AAGTCATGCC CAGAAGTATT TTATCCGACA AAGTCATGCT
ACCAGGAGAA AGAGACGTTC CAGCCTTTTT GACATGGTTC CGGATATGAC TTCAGATCCA CCTTCTGTGC CAGAAGAACA
AGTTCTGCTT CCACCTTCTG AGAACTCGCA ACCTTGTACT GGAAAATCGC AGCCTTCACT AAATCTCTCC CTCAAATCAG
AATTTGAACC CATGGAAACT TCTCAAGAAA ACATGGAACA GACCAATGAA ACTATGATGG GATCAAACGG ACTGACATCA
ATGGCTCCTC ATGGATTCTT CCCCACTTAT TTACCTGTTC CATTTCCCAT ATGGCCATCA GCTGCAGCTC CTTTTGAAGA
AGTTAAGGGA GGAGAGACAT CCCATCATCA GGTCCACAGG CCAATCCCAG TCATTGCCAA GGAACCTGTC AATGTTGACG
AACTCGTGGG AATGTCTCAT CTCAGCATTG GGGAAACACA GGTACGTGAT AGAGAGCCTT CCCCACTTTC CTTAAAGTTG
TTAGGGGAAC CCTCTAGGCA GTCAGCATTC CATGCAAATG CTCCAGTTGG TGGTTCCGAT TTAAAAACTG GCAAGAACAA
AGCAATTCAA GCGGTTTGA

>Vigan.07G025200.01
MTRRCSHCSN NGHNSRTCPS RGVGAGVKLF GVRLTDGSII KKSASMGNLN LASTHHHSSP SSSNLAASSP NPSSPCSDPP
HEPQGYLSDD PAHISTFANR RGERKKGVAW TEEEHRLFLI GLQKLGKGDW RGIARNFVVT RTPTQVASHA QKYFIRQSHA
TRRKRRSSLF DMVPDMTSDP PSVPEEQVLL PPSENSQPCT GKSQPSLNLS LKSEFEPMET SQENMEQTNE TMMGSNGLTS
MAPHGFFPTY LPVPFPIWPS AAAPFEEVKG GETSHHQVHR PIPVIAKEPV NVDELVGMSH LSIGETQVRD REPSPLSLKL
LGEPSRQSAF HANAPVGGSD LKTGKNKAIQ AV*