GBrowse Details

Vigan.07G025600.01

Basic Information:
Name: Vigan.07G025600.01
Multiple alignment
Variant Information
Position: Chr07:1828418..1830780 (+ strand)
Length: 2363
Functional Information:
Description: Similar to clavaminate synthase-like protein At3g21360-like. [XP_004302856.1, Fragaria vesca subsp. vesca]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Taurine catabolism dioxygenase TauD/TfdA (IPR003819)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:84.61,40.72,11.12,17.72,9.80,30.19,6.90,4.45
Arabidopsis thaliana homolog: AT3G21360.1
Automatic updates:
Name: NM_001254062 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clavaminate synthase-like protein At3g21360-like (LOC100797326), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1828418..1828536 (+ strand)
Length: 119
Type: five_prime_UTR
Position: Chr07:1828537..1829138 (+ strand)
Length: 602
Type: CDS
Position: Chr07:1829354..1829714 (+ strand)
Length: 361
Type: CDS
Position: Chr07:1829715..1830780 (+ strand)
Length: 1066
Type: three_prime_UTR


>Vigan.07G025600.01
TCGGATAACT TTCAAAACAA ATGCAATGTA AAGTTTTACT TACATTTAAT TATGGAGCTA TTTGTGAATA TAAACCCACA
CTTATCCTTT CCATGGTTGG TGACTGAGAA AAACAAAACA TGGGAACTGC TTTTGTGGAA ATCTATGTTC CCGGACAGAA
GTTTGTGAAC GGAGTTCCAT TTCCTGCGGT GCTTTCTCCG TCTGCAAGTG CAATTTCTCT CACGGATTCC GTCAAAGCTA
ACCAACTCTT CCTCCAATCA CTTCTACTCC AATCGGGGGC TGTCCTTTTC AGAGGCTTTC CCCTCTCCAC CGCTTCCCAC
TTCAACGACG TCGTCGAAGC GTTCGGGTAC GACGAGCTTC CCTACGTGGG CGGCGCCGCT CCCCGCACCA ACGTCGTCGG
TCGCGTCTTC ACCGCCAATG AGTCCCCACC TGACCAGAAG ATCCCTTTCC ACCACGAAAT GGCTCAAGTT CCTGAATTTC
CTTCCAAATT GTTTTTCTTC TGCGAAGTGG AGCCTGGGAG TGGGGGCGAA ACCCCCATTG TTCTCAGCCA TGTCGTGTAT
GAAAGGATGA AGGACAAATA CCCCGAGTTC GTGGAGAGAC TAGAGAAGCA TGGCTTATTG TACATCAGGG TTTTGGGAGA
AGACGATAAC CCTTCTTCCC CAATTGGCCG TGGCTGGAAA TCAACCTTCT TAACCACAGA CAAAGCCATC GCTCAACAAA
GGGCTGCTAA ACTGGGTATG AAGTTGGAAT GGCTGGAGGA TGGTGTGAAG ACGATTATGG GTCCAATTCC GGGTGTGAAA
TATGATGAGA GTAGACAGCG GAAGATATGG TTTAACAGCA TGGTGGCTGC TTACACAGGT TGGGAAGATG AACGGAATGA
TCCTGTTAAA GCTGTAACCT TTGGGGATGG CGAACCACTA CCTCCTGATA TAGTCTATGA TTGTCTGCAC ATACTGGAAG
AGGAATCTGT GGCCATTCCT TGGCAAAAAG GGGATGTTCT CTTGATTGAT AATTGGGCCG TCCTTCATTC CAGAAGATCT
TTCCATCCAC CACGCAGGGT CCTAGCTTCC CTTGTCAAGT AAGCCTTTGT AGCAGCTAGC TACAAACACT GTCACTACTA
CCTTAAGTTC TGTCTGTATT GTAATTTCAT ACAGATACAT CCAGATGTAT ACCATTACCA TATTTGAAAC AATAACCACT
TCAGTATCAA TAACAAAACC TTGAACTATT AAGAATTATA AGTTAGAAAC AAGAAGAGGA AAGACATGTC TTTTTATATT
TAGTGAACAA GCAAGTCCAA TCGGAAATTA TGTTATTATT ATCTCGAGAA AATAGCATGT CGTTTGGGAG CATGAAAAGA
TTGCTTGTCC TAGCATGATT CAACACGAAG CAACATTTTT AGACGATTGT TACATCCATA AAATGTGGGA ATTACATCAC
GCCTTGTTTT ATCTGACCCT TGGGAAGGGT ATAAACATTG CAAGTAATTA ATGAGTACAC ACATGTACAT TAATGAAATT
ACAAATTATG TCGGTAGCAA TCAGAGCGCA GCGAAATCTT TTCTCAACTC AATCACAACA TATTTTAATT ACCAAAACTT
TGTCCTGTAA AATACAATTG ACTCATCGGT TTCATGTGAA GTCTTAGCTC ATATTTTATT GTATCTCTAT ATTGTAAAAG
GGGGAGGAGA AGATAATGGA GTAGTGGGGG GAAATGATGA TGATGGTGTG TAAACTATCT TCCCTGAACA AGAGCGCTGA
ATACCTGGCT GTTCCCTGCA AGAGTTGCTT CCCACTCAGC AGAAGACAGC AGGATTTGTG AGAGGGAAAT CACAACTTGC
TTCATGTCAG GGCGTAATAC GGGATCATCT TCCACACATT GCTTTGCCAG CATGGCCATC TATGTAAAAC ACAACAAAAC
ACCAAGATCA ACGGCCAGTA GAGTAAAATC TTATGCAGAA TGTCATCCCT TGATATGTCA CTTCAAAGTG GATGTAGTTT
TGTTTTATTT TTAATTTTCA TTAGTCCAAG AGAAACTATG AAACAAATTA ACATTTTCTT GATTACGCTG TGAGCTGGAC
AATCTTCAAG CTTCTTGGGT GAAAAACCAA ATACCCAGAA CCATAAACAT AATAATAGAA AAATGGAG

>Vigan.07G025600.01
ATGGGAACTG CTTTTGTGGA AATCTATGTT CCCGGACAGA AGTTTGTGAA CGGAGTTCCA TTTCCTGCGG TGCTTTCTCC
GTCTGCAAGT GCAATTTCTC TCACGGATTC CGTCAAAGCT AACCAACTCT TCCTCCAATC ACTTCTACTC CAATCGGGGG
CTGTCCTTTT CAGAGGCTTT CCCCTCTCCA CCGCTTCCCA CTTCAACGAC GTCGTCGAAG CGTTCGGGTA CGACGAGCTT
CCCTACGTGG GCGGCGCCGC TCCCCGCACC AACGTCGTCG GTCGCGTCTT CACCGCCAAT GAGTCCCCAC CTGACCAGAA
GATCCCTTTC CACCACGAAA TGGCTCAAGT TCCTGAATTT CCTTCCAAAT TGTTTTTCTT CTGCGAAGTG GAGCCTGGGA
GTGGGGGCGA AACCCCCATT GTTCTCAGCC ATGTCGTGTA TGAAAGGATG AAGGACAAAT ACCCCGAGTT CGTGGAGAGA
CTAGAGAAGC ATGGCTTATT GTACATCAGG GTTTTGGGAG AAGACGATAA CCCTTCTTCC CCAATTGGCC GTGGCTGGAA
ATCAACCTTC TTAACCACAG ACAAAGCCAT CGCTCAACAA AGGGCTGCTA AACTGGGTAT GAAGTTGGAA TGGCTGGAGG
ATGGTGTGAA GACGATTATG GGTCCAATTC CGGGTGTGAA ATATGATGAG AGTAGACAGC GGAAGATATG GTTTAACAGC
ATGGTGGCTG CTTACACAGG TTGGGAAGAT GAACGGAATG ATCCTGTTAA AGCTGTAACC TTTGGGGATG GCGAACCACT
ACCTCCTGAT ATAGTCTATG ATTGTCTGCA CATACTGGAA GAGGAATCTG TGGCCATTCC TTGGCAAAAA GGGGATGTTC
TCTTGATTGA TAATTGGGCC GTCCTTCATT CCAGAAGATC TTTCCATCCA CCACGCAGGG TCCTAGCTTC CCTTGTCAAG
TAA

>Vigan.07G025600.01
MGTAFVEIYV PGQKFVNGVP FPAVLSPSAS AISLTDSVKA NQLFLQSLLL QSGAVLFRGF PLSTASHFND VVEAFGYDEL
PYVGGAAPRT NVVGRVFTAN ESPPDQKIPF HHEMAQVPEF PSKLFFFCEV EPGSGGETPI VLSHVVYERM KDKYPEFVER
LEKHGLLYIR VLGEDDNPSS PIGRGWKSTF LTTDKAIAQQ RAAKLGMKLE WLEDGVKTIM GPIPGVKYDE SRQRKIWFNS
MVAAYTGWED ERNDPVKAVT FGDGEPLPPD IVYDCLHILE EESVAIPWQK GDVLLIDNWA VLHSRRSFHP PRRVLASLVK
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