VIGGS:GBrowse

Vigan.07G036500.01

Basic Information:

Name:	Vigan.07G036500.01 Multiple alignment Variant Information
Position:	Chr07:2561279..2565690 (- strand)
Length:	4412

Functional Information:

Description:	Similar to Uncharacterized protein. [V7ATE3, Phaseolus vulgaris]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Molecular Function: protein binding (GO:0005515)
	Molecular Function: zinc ion binding (GO:0008270)
	Molecular Function: histone binding (GO:0042393)
InterPro:	Zinc finger, PHD-type (IPR001965)
	Zinc finger, FYVE/PHD-type (IPR011011)
	Zinc finger, RING/FYVE/PHD-type (IPR013083)
	Zinc finger, PHD-type, conserved site (IPR019786)
	Zinc finger, PHD-finger (IPR019787)
	Alfin (IPR021998)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:17.45,18.69,14.35,30.43,9.60,23.30,17.60,14.35

Automatic updates:

Name:	NM_001250922 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max PHD finger protein (LOC100170696), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001348659 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max PHD finger superfamily protein (LOC100777146), transcript variant 2, mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:2561279..2561610 (- strand)
Length:	332
Type:	three_prime_UTR

Position:	Chr07:2561611..2561877 (- strand)
Length:	267
Type:	CDS

Position:	Chr07:2562967..2563105 (- strand)
Length:	139
Type:	CDS

Position:	Chr07:2563760..2563988 (- strand)
Length:	229
Type:	CDS

Position:	Chr07:2564807..2564839 (- strand)
Length:	33
Type:	CDS

Position:	Chr07:2565341..2565425 (- strand)
Length:	85
Type:	CDS

Position:	Chr07:2565426..2565690 (- strand)
Length:	265
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G036500.01
CGACGATCGA TATGCGTGGA AGCAGTGAGG TTGTAACTTA ATTAAGGTGG ATGCGAGCAC AGAGAATTGA AGGAGGAGGA
TTCATTGTTC ATCATGCAAA TGAAATAAAT TTCACTACAC TATACTCAAA CGCAGCACAT ACCATAATAC CCTGCGATTG
CGTTTTTCCT ATTCTCTCTT CTCTCTCTGA ATTTTGTTGT GAACAAAGTT GCGTGTGTGC AGTGTGGTGA GACCCTAAAC
GACCTCGTTT TCACGTTCTC TGAGAATGGA AGCGCGAAGT CGCTCCGTGG AAGACATATT CGAGGATTTC AAGGGCCGAC
GAGCAGGCAT CATCAAAGCC CTCACCACCG ATGTTGAAGA TTTCTACAGT CAATGTGATC CTGAGAAGGA GAATCTGTGC
TTATATGGAT TACCCAGTGA GCAGTGGGAA GTAAATTTAC CTGTAGAAGA AGTTCCTCCA GAGCTTCCTG AGCCTGTCCT
GGGCATTAAC TTTGCTAGGG ATGGCATGCA GGAAAAAGAC TGGCTATCTT TAGTTGCTGT TCATAGTGAT ACATGGTTGC
TTGCCCTTGC CTTTTATTTT GGAGCCAGAT TTGGATTTGA TAAAACTGAC AGGAAACGAC TATTCAGTAT GATCAATGAA
CTACCAACAA TATTTGAAGT TGTTACTGGT GGTGGAGCAA AGAAGCCAGT TAAAGAGAAG TCTTCAGTTT CGAACAACAA
TGGAAACAAA TCTAAGTCTA ACTCTAAAGT GCGGGTTCCC GAAACCCAGG GCAGACAGTC AAAGGCCTTG TTACAACCAA
AAGATGAGGA TGAAGGACTA GAAGAGCAAG ATGAAGATGA ACATGGAGAG ACCTTGTGTG GGGCATGTGG TGAGAATTAT
GGCACTGATG AGTTCTGGAT TTGCTGTGAC ATCTGCGAGA AGTGGTTCCA TGGCAAATGC GTGAAGATAA CCCCTGCTAG
GGCAGAGCAC ATCAAGCAAT ACAAGTGTCC ATCGTGCAGT AACAAGAGAG CTCGCTAATC AAGTTTCCGT TATGGACAAA
CTTTGTTCGA GCCTTTACTA ATCTGGTTAA TATGTGTTTC TTTCTAGATG TAGTTGATGG ATAGTTTTTC TGTTTGACAC
ACATGTAGAT TTTTTGTCTT TTGTGATTGT CTTGGGAAAG TTGTCTTTTC CTAAGCCTTG CCCTAGCTAT GGATTCACGT
TGGCATAAGC TTCATATGAA TGGGGTTGAA ACCTTAATCT CCTGGCCACC TTAAATATTA AGGAAATTGA AGTGCTACAA
CATTTGCACC AAATGAATGG ATGGCATTTG AACATGTTAA TTTTCAGTTC TTTCGATTGT CTGAGGGGAA

[show][hide][copy]CDS

>Vigan.07G036500.01
ATGGAAGCGC GAAGTCGCTC CGTGGAAGAC ATATTCGAGG ATTTCAAGGG CCGACGAGCA GGCATCATCA AAGCCCTCAC
CACCGATGTT GAAGATTTCT ACAGTCAATG TGATCCTGAG AAGGAGAATC TGTGCTTATA TGGATTACCC AGTGAGCAGT
GGGAAGTAAA TTTACCTGTA GAAGAAGTTC CTCCAGAGCT TCCTGAGCCT GTCCTGGGCA TTAACTTTGC TAGGGATGGC
ATGCAGGAAA AAGACTGGCT ATCTTTAGTT GCTGTTCATA GTGATACATG GTTGCTTGCC CTTGCCTTTT ATTTTGGAGC
CAGATTTGGA TTTGATAAAA CTGACAGGAA ACGACTATTC AGTATGATCA ATGAACTACC AACAATATTT GAAGTTGTTA
CTGGTGGTGG AGCAAAGAAG CCAGTTAAAG AGAAGTCTTC AGTTTCGAAC AACAATGGAA ACAAATCTAA GTCTAACTCT
AAAGTGCGGG TTCCCGAAAC CCAGGGCAGA CAGTCAAAGG CCTTGTTACA ACCAAAAGAT GAGGATGAAG GACTAGAAGA
GCAAGATGAA GATGAACATG GAGAGACCTT GTGTGGGGCA TGTGGTGAGA ATTATGGCAC TGATGAGTTC TGGATTTGCT
GTGACATCTG CGAGAAGTGG TTCCATGGCA AATGCGTGAA GATAACCCCT GCTAGGGCAG AGCACATCAA GCAATACAAG
TGTCCATCGT GCAGTAACAA GAGAGCTCGC TAA

[show][hide][copy]PROTEIN

>Vigan.07G036500.01
MEARSRSVED IFEDFKGRRA GIIKALTTDV EDFYSQCDPE KENLCLYGLP SEQWEVNLPV EEVPPELPEP VLGINFARDG
MQEKDWLSLV AVHSDTWLLA LAFYFGARFG FDKTDRKRLF SMINELPTIF EVVTGGGAKK PVKEKSSVSN NNGNKSKSNS
KVRVPETQGR QSKALLQPKD EDEGLEEQDE DEHGETLCGA CGENYGTDEF WICCDICEKW FHGKCVKITP ARAEHIKQYK
CPSCSNKRAR *