GBrowse Details

Vigan.07G037900.01

Basic Information:
Name: Vigan.07G037900.01
Multiple alignment
Variant Information
Position: Chr07:2665703..2670589 (+ strand)
Length: 4887
Functional Information:
Description: Similar to RNA-binding ASCH domain protein, putative isoform 1. [XP_007033872.1, Theobroma cacao]
InterPro: ASCH domain (IPR007374)
PUA-like domain (IPR015947)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.42,56.65,5.85,9.19,5.41,3.32,12.24,11.23
Arabidopsis thaliana homolog: AT2G43465.1
Automatic updates:
Name: NM_001255311 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100807259 (LOC100807259), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:2665703..2665778 (+ strand)
Length: 76
Type: five_prime_UTR
Position: Chr07:2665779..2665983 (+ strand)
Length: 205
Type: CDS
Position: Chr07:2666119..2666315 (+ strand)
Length: 197
Type: CDS
Position: Chr07:2666400..2666460 (+ strand)
Length: 61
Type: CDS
Position: Chr07:2666691..2666739 (+ strand)
Length: 49
Type: CDS
Position: Chr07:2667451..2667505 (+ strand)
Length: 55
Type: CDS
Position: Chr07:2667597..2667684 (+ strand)
Length: 88
Type: CDS
Position: Chr07:2667936..2668054 (+ strand)
Length: 119
Type: CDS
Position: Chr07:2668421..2668546 (+ strand)
Length: 126
Type: CDS
Position: Chr07:2668695..2668782 (+ strand)
Length: 88
Type: CDS
Position: Chr07:2669809..2669963 (+ strand)
Length: 155
Type: CDS
Position: Chr07:2670249..2670308 (+ strand)
Length: 60
Type: CDS
Position: Chr07:2670309..2670589 (+ strand)
Length: 281
Type: three_prime_UTR


>Vigan.07G037900.01
AAATTTCATA ATTAAATATT CCACGAAATT CAACCAAAGA AAGTAATACA GTAGTAGCGA CAGAATTGAG CGGAAAATGG
ACAAGAAAGG CAGTGTTTAC GATGAAAATG GTGATCGGTG TTCGTTTCCG GTGAAACTGG GTGATTGTTT AGAAGAACTT
GTTAGGTTCA GTTTCAGTTC TCGCTCTCAC CATCTCAATC TTTCATCCCA ATTCTGCTCC ACTCTTCTCA AAGATGACCC
AACATACCCA TCATCCTCAC ACTCACAATT ACAACCACAT GATTCTTTGG AAGGAGTGCC ACCGTATCCC TTATACAAGC
GTCTGCCTTC AGCTCTGTTG AGGTGTATTG ATTCTGGAAC GTTTTGTAGG ACAGGCAGCA ATTTAGCCAT GGGCCATGAA
TTTGAAGATT CTTCCATACA GCAGAAACAA CAACAGTGGC AAAAATTGAT TCTGGAGAAG GGGTTTGAAA TAGGAAACGT
TTTGAAGGGT GTTTCCTTTG AACTCCACGT CCAAGAGCCT TTCTTTTCAC AGCTAACTGA TGGCCTAAAA ACAATTGAAG
GGAGGTGTGC TAGTGGGAAG TACAATAGGA TTAAATCAGG AAATCTGATT CTCTTTAACA AGTCTGTGGT TTTCGAAGTT
CAGGGAGTAA GACGGTATCC AACATTCTTT GCCATGTTAG AGGCAGAAAG CCTTGGAAAA GTTCTTCCAG GAGTTGAAAG
TGGGGAAGAA GGTGTAAAAG TCTACCGGAG GTTCTACACA GAGGAGCAGG AACATGAAAA TGGTGTTCTT GCAATCATTG
TTTCAAAATT CACCCCTCAA CCATACGATT CTTTGGCTAG CTTATTCTGT GGATTAAGCT ATGAAGGTGT TCAAGGCCTT
CTAGGTCTGA TGCAGACCAC AGGGACAATT TCTGATGCAT TACCTCCGCC AATATCAACT CTATTAGCCT CTTTTAATTT
TCCCTGCAAT CCAAATGAAA ATGGCTTGAC TCATGGAGCT CGTGCGTTGG CCAAGCATGC TTGTAGGAGT ATCGGTAGTT
ATTGGGGTTC TCTAAATGGA AACGATTCTA ATAAAAATAG GCTTGCAAAG GATGCCATTA ACCGCTTAAT ATCACATTGT
TGTTGGCTGA ATGTGCATAC TGTCCCACCG CATGGAGTTG TCTTTGAAAT AAGGGTTGCC GATGGATATG GTGCCCGCTG
GAATGAAGAT GGAAGTAAGT TTATCGGATT TTTAGAGCCT TACATGCAAG ATGGTCACTC AAAGGGATGG AAGCACTAGT
TATGCTAGCT AGACCACAGC AACTGCAGCT TTGTAATTGA ACGTCACAAC TTTTCCTTTT TTATCGTTTG ATGGAGCTGT
GTTATGGTAC AGTATTTGTT TTTTATCTCT TGACTGTAGC TAACACTCTA GCCTATATCT GAGAGTAATC TACTTAAGGA
GACTTCTGTA TATAGATAGA GGGTGGAGTC AGTATAAATG CTACTTGTTT CATCTTGTAC TTTCCAGAAG AAGTGTCCGT
TTAGCCCAAC TTGATCATTA AAATATGCTG ACAAGTTCCA 

>Vigan.07G037900.01
ATGGACAAGA AAGGCAGTGT TTACGATGAA AATGGTGATC GGTGTTCGTT TCCGGTGAAA CTGGGTGATT GTTTAGAAGA
ACTTGTTAGG TTCAGTTTCA GTTCTCGCTC TCACCATCTC AATCTTTCAT CCCAATTCTG CTCCACTCTT CTCAAAGATG
ACCCAACATA CCCATCATCC TCACACTCAC AATTACAACC ACATGATTCT TTGGAAGGAG TGCCACCGTA TCCCTTATAC
AAGCGTCTGC CTTCAGCTCT GTTGAGGTGT ATTGATTCTG GAACGTTTTG TAGGACAGGC AGCAATTTAG CCATGGGCCA
TGAATTTGAA GATTCTTCCA TACAGCAGAA ACAACAACAG TGGCAAAAAT TGATTCTGGA GAAGGGGTTT GAAATAGGAA
ACGTTTTGAA GGGTGTTTCC TTTGAACTCC ACGTCCAAGA GCCTTTCTTT TCACAGCTAA CTGATGGCCT AAAAACAATT
GAAGGGAGGT GTGCTAGTGG GAAGTACAAT AGGATTAAAT CAGGAAATCT GATTCTCTTT AACAAGTCTG TGGTTTTCGA
AGTTCAGGGA GTAAGACGGT ATCCAACATT CTTTGCCATG TTAGAGGCAG AAAGCCTTGG AAAAGTTCTT CCAGGAGTTG
AAAGTGGGGA AGAAGGTGTA AAAGTCTACC GGAGGTTCTA CACAGAGGAG CAGGAACATG AAAATGGTGT TCTTGCAATC
ATTGTTTCAA AATTCACCCC TCAACCATAC GATTCTTTGG CTAGCTTATT CTGTGGATTA AGCTATGAAG GTGTTCAAGG
CCTTCTAGGT CTGATGCAGA CCACAGGGAC AATTTCTGAT GCATTACCTC CGCCAATATC AACTCTATTA GCCTCTTTTA
ATTTTCCCTG CAATCCAAAT GAAAATGGCT TGACTCATGG AGCTCGTGCG TTGGCCAAGC ATGCTTGTAG GAGTATCGGT
AGTTATTGGG GTTCTCTAAA TGGAAACGAT TCTAATAAAA ATAGGCTTGC AAAGGATGCC ATTAACCGCT TAATATCACA
TTGTTGTTGG CTGAATGTGC ATACTGTCCC ACCGCATGGA GTTGTCTTTG AAATAAGGGT TGCCGATGGA TATGGTGCCC
GCTGGAATGA AGATGGAAGT AAGTTTATCG GATTTTTAGA GCCTTACATG CAAGATGGTC ACTCAAAGGG ATGGAAGCAC
TAG

>Vigan.07G037900.01
MDKKGSVYDE NGDRCSFPVK LGDCLEELVR FSFSSRSHHL NLSSQFCSTL LKDDPTYPSS SHSQLQPHDS LEGVPPYPLY
KRLPSALLRC IDSGTFCRTG SNLAMGHEFE DSSIQQKQQQ WQKLILEKGF EIGNVLKGVS FELHVQEPFF SQLTDGLKTI
EGRCASGKYN RIKSGNLILF NKSVVFEVQG VRRYPTFFAM LEAESLGKVL PGVESGEEGV KVYRRFYTEE QEHENGVLAI
IVSKFTPQPY DSLASLFCGL SYEGVQGLLG LMQTTGTISD ALPPPISTLL ASFNFPCNPN ENGLTHGARA LAKHACRSIG
SYWGSLNGND SNKNRLAKDA INRLISHCCW LNVHTVPPHG VVFEIRVADG YGARWNEDGS KFIGFLEPYM QDGHSKGWKH
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