GBrowse Details

Vigan.07G039400.01

Basic Information:
Name: Vigan.07G039400.01
Multiple alignment
Variant Information
Position: Chr07:2767509..2770222 (+ strand)
Length: 2714
Functional Information:
Description: Similar to Salt-tolerance protein. [Q308N9, Glycine max]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, B-box (IPR000315)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.03,62.80,182.04,0.61,31.54,1.86,45.27
Automatic updates:
Name: NM_001253105 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max B-Box-type zinc finger protein (LOC100797515), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255495 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max B-box zinc finger protein (LOC100814727), mRNA.
PubMed ID: 24416275 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:2767509..2768036 (+ strand)
Length: 528
Type: five_prime_UTR
Position: Chr07:2768037..2768219 (+ strand)
Length: 183
Type: CDS
Position: Chr07:2768625..2768924 (+ strand)
Length: 300
Type: CDS
Position: Chr07:2769551..2769790 (+ strand)
Length: 240
Type: CDS
Position: Chr07:2769791..2770222 (+ strand)
Length: 432
Type: three_prime_UTR


>Vigan.07G039400.01
CAATTATTCA AAAAGAAGTA GTTGTATGAG ATTTTGAAAA GATAGATTGC AGCTGTTTTT AGTGTCTTGT TATTTTAGAG
AAGATAGAAT GAATATGAAG GAAATATAGT GTCCACTCAA AAATGGCTTG TACTTGTTGA TGCATCCACA GCCACACATA
CCATTGACAA AGTAACCCCA CTAATCCCTG TTGGTTTTAT TGTTGTTGCA GAAACTGATA TGCAATGCAA TGCAACATCC
AATTCCTTAT CTTCCTCACA TGCTCTCAAA TCTCATCCAG TCACTTCTTT TTCTGTCCTC AACCACATTA AATACTTGTT
CTGTTCAGTA CTTCAATAGT TAATCGTGTT ATCTTTTTGT TCTCTTCTCT ACAGCTTGTC CTAATCTTTC TACTCCATGA
TTGTCCTTGT TTTGGCTTTG CAAAGTCCTG TCTGCTAAAG GGTTCTGAGA ATTTCTTTTT GTGAGAATTT GTTGTTTTTC
TGATAAAGAA GGACTGGTTT CATTGTTGCA CAAGGGAAAA GAACTGACAT GAAAATTCAG TGTGATGTGT GTGAGAGGGC
TCCGGCAACA GTGATTTGTT GCGCAGATGA GGCAGCTTTG TGTGCCAAAT GTGATGTTGA AGTTCATGCT GCAAACAAAC
TTGCAAGCAA GCACCAAAGG CTTCTCCTTC AATGTCTATC AAACAAGCTT CCCAGATGTG ACATTTGCCA AGACAAGCCA
GCATTCATAT TTTGTGTTGA AGACAGAGCA CTCTTCTGTC AGGACTGTGA TGAACCAATT CATTCAGCTG GAAGCCTTTC
TGCAAACCAC CAGCGCTTCC TAGCTACTGG TATCAGAGTG GCCTCAAGTT CTAGTTGCAC CAAAGACAAT GAAAAGAGTC
ACTTGGAGCC TCCCAATAGG AATGCACAAC AAGTTTCCAC CAAAGTTCCT TCTCAGCAAG TGCCTAGCTT CACATCCTCT
TGGGCTGTTG ATGACTTTTT GGAGTTAACA GGCTTTGAAT CACCTGAGAA AAAGGAATCT CTACAATTTG GAGAGCTGGA
ATGGCTTACA GATGTGGGTA TTTTTGGTGA ACAATTTACT CAGGAAGCAT TGGCTGCAGC TGAAGTACCT CAGCTTCCAG
TAACTAATAA TAGCAGCAGT GTTGCCTCAT TCAGAACCTC CAAGTCCTAC ATGTCACACA AAAAACCTAG GATTGAAGTC
CTAAATGATG ATGATGATGA TGAGTACTTT ACTGTGCCTG ATCTTGGCTA GGAACACAGA TTCCATTTGG GGTGTTACAT
GCATGATTGG AAAGACTAAT TATGAGGAAA ACATGTTTTA TTTCTTCTGC AAAAGCTCTT TCAGTGAAAT GTCGACAAAG
ATTATTATTT TCTCAAAAAT AAACTATTTC AACCAGACAC GATTATATGG TGTATATTCA ATCATTCATA CTTCACTAAA
GACAATCATT TTTGCAACTT GTGTGTGGAG TTGATAAGTA TTGTACTTTA GGTGTTTTTC TGCTGGATAA CATAGAATTC
CATGCTTTTG GAGAATGAAA TTTTCATGTC CTTAGTCACT GTGCATGCTT CAATACACTA GGGATTCTCC CACTGTCACA
TCTTCCTAAT TGATCCCAAT AATTTGAGTT TATTTTGTTT GTATGCAACA AACAATGCTA TTTAATTTTA CTCATTATTA
CTA

>Vigan.07G039400.01
ATGAAAATTC AGTGTGATGT GTGTGAGAGG GCTCCGGCAA CAGTGATTTG TTGCGCAGAT GAGGCAGCTT TGTGTGCCAA
ATGTGATGTT GAAGTTCATG CTGCAAACAA ACTTGCAAGC AAGCACCAAA GGCTTCTCCT TCAATGTCTA TCAAACAAGC
TTCCCAGATG TGACATTTGC CAAGACAAGC CAGCATTCAT ATTTTGTGTT GAAGACAGAG CACTCTTCTG TCAGGACTGT
GATGAACCAA TTCATTCAGC TGGAAGCCTT TCTGCAAACC ACCAGCGCTT CCTAGCTACT GGTATCAGAG TGGCCTCAAG
TTCTAGTTGC ACCAAAGACA ATGAAAAGAG TCACTTGGAG CCTCCCAATA GGAATGCACA ACAAGTTTCC ACCAAAGTTC
CTTCTCAGCA AGTGCCTAGC TTCACATCCT CTTGGGCTGT TGATGACTTT TTGGAGTTAA CAGGCTTTGA ATCACCTGAG
AAAAAGGAAT CTCTACAATT TGGAGAGCTG GAATGGCTTA CAGATGTGGG TATTTTTGGT GAACAATTTA CTCAGGAAGC
ATTGGCTGCA GCTGAAGTAC CTCAGCTTCC AGTAACTAAT AATAGCAGCA GTGTTGCCTC ATTCAGAACC TCCAAGTCCT
ACATGTCACA CAAAAAACCT AGGATTGAAG TCCTAAATGA TGATGATGAT GATGAGTACT TTACTGTGCC TGATCTTGGC
TAG

>Vigan.07G039400.01
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPRCDIC QDKPAFIFCV EDRALFCQDC
DEPIHSAGSL SANHQRFLAT GIRVASSSSC TKDNEKSHLE PPNRNAQQVS TKVPSQQVPS FTSSWAVDDF LELTGFESPE
KKESLQFGEL EWLTDVGIFG EQFTQEALAA AEVPQLPVTN NSSSVASFRT SKSYMSHKKP RIEVLNDDDD DEYFTVPDLG
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