GBrowse Details

Vigan.07G040600.01

Basic Information:
Name: Vigan.07G040600.01
Multiple alignment
Variant Information
Position: Chr07:2846427..2849636 (- strand)
Length: 3210
Functional Information:
Description: Similar to Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha. [G7IHS5, Medicago truncatula]
GO: Biological Process: protein prenylation (GO:0018342)
Molecular Function: protein prenyltransferase activity (GO:0008318)
InterPro: Protein prenyltransferase, alpha subunit (IPR002088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:109.30,84.17,30.25,29.95,33.96,37.58,35.04,33.42
Arabidopsis thaliana homolog: AT3G59380.1
Automatic updates:
Name: NM_001253320 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like (LOC100790130), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:2846427..2846501 (- strand)
Length: 75
Type: three_prime_UTR
Position: Chr07:2846502..2846966 (- strand)
Length: 465
Type: CDS
Position: Chr07:2847940..2848035 (- strand)
Length: 96
Type: CDS
Position: Chr07:2848147..2848267 (- strand)
Length: 121
Type: CDS
Position: Chr07:2848902..2849011 (- strand)
Length: 110
Type: CDS
Position: Chr07:2849198..2849440 (- strand)
Length: 243
Type: CDS
Position: Chr07:2849441..2849636 (- strand)
Length: 196
Type: five_prime_UTR


>Vigan.07G040600.01
CCTCACTTTT GTCAAAGGTA AAAGAAAGGA ATCACATTCA CATGAAACGT CACACAGGCT TTTCATCGTA GAGAAACTCT
ATTGGGCCTA CAAAAGCAAG CCCATAAGCC CAAGGCTTAA AGCAAAAGTT AAGACCCCAG TCTAAATAGA GAGGGCGTGG
GAAAGAGTAA AGCGAAGTGA AGAAGGTTAT CGAAGGATGG AATCTGAAGG CGAAGAGGAG GAGCAAACAC GCGTGCCGCT
GAGGGAGAGA CCGGAGTGGT CAGATGTTAC TCCTCTTCCG CAAAACGACG GCCCCAACCC CGTCGTTCCG ATCCAGTACA
CGCAAGACTT CACCGAAGTC ATGGACTACT TTCGCGCCGT TTACCACGCT GATGAACGCT CCCCTCGCGC CCTAGCTCTC
ACCGCGGAAG TTATCCAGTT CAACTCCGGC AATTACACTG TGTGGCATTT CCGGCGGTTG TTACTTGAGT CGCTAAAAGT
TGACTTGTGC AGTGAACTGG AGTTTGTGGA GCGTATGGCC GCTGGAAATT CCAAAAATTA TCAGATGTGG CATCATAGAC
GATGGGTTGC TGAGAAGTTA GGACCTGAAG CTAGAAAGGT TGAGCTTGAG TTCACCAAAA AGATATTCTC AAATGACGCC
AAACATTATC ATGCATGGTC GCATAGACAG TGGGTTCTTC AAGCACTTGG AGGATGGGAA GATGAGCTTA ATTATTGCTC
AGAACTTCTT GAAGAAGACA TTTTTAATAA TTCTGCTTGG AATCAGAGAT ATTTTGTCAT AACAAGGTCT CCTTTCTTGG
GGGGGCTAAA AGCTATGAGA GAGTCTGAAG TGCTTTATAC CATTGAAGCC ATTGTATCCC AGCCTGAAAA TGAAAGCTCG
TGGAGATATT TACGAGGACT TTATAAAGGT GAAATCACAT CATGGGTAAA TGATCCTCAA GTTTCTTCTG TGTGTTTAAA
GATTTTAAGA ACCAAAAGCA ACTACATGTT TGCTCTTGGC ACTGTTTTGG ATCTCATATG CTATGGCTAT CAACCAAATG
AAGACATGAG AAATGCCATT GAGGCTGTAA ATGCAGTAGA TATGGATAAA CACGGTTTAG AAGGTGACGG GAGAGGGGAA
AATCAAAATT TAAATATAGC ACGAAATATT TGTTCTATCC TAGAACACGT TGATCCAATT AGAACCAACT ATTGGATTTG
GCGCAAGAGT AGGCTTCCTC TTTCGGCCTA GTACCAAAGT TTTTTTAGGA CAACTATGTC GTGTGTACCA AAGCTCATTG
AAGTTATGCC TGATTTTTTG CGATGT

>Vigan.07G040600.01
ATGGAATCTG AAGGCGAAGA GGAGGAGCAA ACACGCGTGC CGCTGAGGGA GAGACCGGAG TGGTCAGATG TTACTCCTCT
TCCGCAAAAC GACGGCCCCA ACCCCGTCGT TCCGATCCAG TACACGCAAG ACTTCACCGA AGTCATGGAC TACTTTCGCG
CCGTTTACCA CGCTGATGAA CGCTCCCCTC GCGCCCTAGC TCTCACCGCG GAAGTTATCC AGTTCAACTC CGGCAATTAC
ACTGTGTGGC ATTTCCGGCG GTTGTTACTT GAGTCGCTAA AAGTTGACTT GTGCAGTGAA CTGGAGTTTG TGGAGCGTAT
GGCCGCTGGA AATTCCAAAA ATTATCAGAT GTGGCATCAT AGACGATGGG TTGCTGAGAA GTTAGGACCT GAAGCTAGAA
AGGTTGAGCT TGAGTTCACC AAAAAGATAT TCTCAAATGA CGCCAAACAT TATCATGCAT GGTCGCATAG ACAGTGGGTT
CTTCAAGCAC TTGGAGGATG GGAAGATGAG CTTAATTATT GCTCAGAACT TCTTGAAGAA GACATTTTTA ATAATTCTGC
TTGGAATCAG AGATATTTTG TCATAACAAG GTCTCCTTTC TTGGGGGGGC TAAAAGCTAT GAGAGAGTCT GAAGTGCTTT
ATACCATTGA AGCCATTGTA TCCCAGCCTG AAAATGAAAG CTCGTGGAGA TATTTACGAG GACTTTATAA AGGTGAAATC
ACATCATGGG TAAATGATCC TCAAGTTTCT TCTGTGTGTT TAAAGATTTT AAGAACCAAA AGCAACTACA TGTTTGCTCT
TGGCACTGTT TTGGATCTCA TATGCTATGG CTATCAACCA AATGAAGACA TGAGAAATGC CATTGAGGCT GTAAATGCAG
TAGATATGGA TAAACACGGT TTAGAAGGTG ACGGGAGAGG GGAAAATCAA AATTTAAATA TAGCACGAAA TATTTGTTCT
ATCCTAGAAC ACGTTGATCC AATTAGAACC AACTATTGGA TTTGGCGCAA GAGTAGGCTT CCTCTTTCGG CCTAG

>Vigan.07G040600.01
MESEGEEEEQ TRVPLRERPE WSDVTPLPQN DGPNPVVPIQ YTQDFTEVMD YFRAVYHADE RSPRALALTA EVIQFNSGNY
TVWHFRRLLL ESLKVDLCSE LEFVERMAAG NSKNYQMWHH RRWVAEKLGP EARKVELEFT KKIFSNDAKH YHAWSHRQWV
LQALGGWEDE LNYCSELLEE DIFNNSAWNQ RYFVITRSPF LGGLKAMRES EVLYTIEAIV SQPENESSWR YLRGLYKGEI
TSWVNDPQVS SVCLKILRTK SNYMFALGTV LDLICYGYQP NEDMRNAIEA VNAVDMDKHG LEGDGRGENQ NLNIARNICS
ILEHVDPIRT NYWIWRKSRL PLSA*