GBrowse Details

Vigan.07G046900.01

Basic Information:
Name: Vigan.07G046900.01
Multiple alignment
Variant Information
Position: Chr07:3333842..3335831 (- strand)
Length: 1990
Functional Information:
Description: Similar to transcription elongation factor B polypeptide 1-like isoform X2. [XP_004507152.1, Cicer arietinum]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
InterPro: SKP1 component (IPR001232)
BTB/POZ fold (IPR011333)
SKP1 component, POZ domain (IPR016073)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:83.64,41.34,51.66,57.78,68.20,77.78,54.49,37.66
Arabidopsis thaliana homolog: AT5G59140.1
Automatic updates:
Name: NM_001248584 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305702 (LOC100305702), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249830 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500097 (LOC100500097), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3333842..3333987 (- strand)
Length: 146
Type: three_prime_UTR
Position: Chr07:3333988..3334066 (- strand)
Length: 79
Type: CDS
Position: Chr07:3335399..3335504 (- strand)
Length: 106
Type: CDS
Position: Chr07:3335595..3335706 (- strand)
Length: 112
Type: CDS
Position: Chr07:3335707..3335831 (- strand)
Length: 125
Type: five_prime_UTR


>Vigan.07G046900.01
CGTCCAAAAA GGCCGGGATC AAAGCCCTTC CTCCCATAAA ACTTGAGTTT GAAAATGCGA ACTCTGACGT TCCGGCCATA
ATCGATTGTG GTTAAACGCA AGGTGAAGGA GGCGAGAATC AGAAGATGAA GAAGGAAGAC ACAGTAAAAC TGATCAGCGC
GGAGGGTTTT GAATTTGTGG TCGACAAAGA AGCTGCAATG GTTTCACAGA CCATACATAA CATGCTTACT TCTCCAGGGA
GTTTCTCTGA GAGGCAGCAC GGCGAAGTTA CCTTTCCCGA GATTAGTACC ACCATTCTGG AGAAGATTTG CCAGTACTTT
TATTGGCATC TACAATTTGC CAGTGGGAAG GAAACGGAAT TTCCCATTGA ACCTGAGTTA ACTCTAGAGC TAATGATGGC
TGCCAATTAC CTCCATACAT AAGCATTTTA CTTCCCCAAG GTGATAGTTC TTCGTCCTCA TCGTAAGCCT ATATTATTCT
CCTGGAGTCT AACAAATAAT AGTAGTATTT TTTGTCATGT TGATTTTTGC TGTTTTTGTT CATGCAGATG GAATTATTAC
TTGGTTAG

>Vigan.07G046900.01
ATGAAGAAGG AAGACACAGT AAAACTGATC AGCGCGGAGG GTTTTGAATT TGTGGTCGAC AAAGAAGCTG CAATGGTTTC
ACAGACCATA CATAACATGC TTACTTCTCC AGGGAGTTTC TCTGAGAGGC AGCACGGCGA AGTTACCTTT CCCGAGATTA
GTACCACCAT TCTGGAGAAG ATTTGCCAGT ACTTTTATTG GCATCTACAA TTTGCCAGTG GGAAGGAAAC GGAATTTCCC
ATTGAACCTG AGTTAACTCT AGAGCTAATG ATGGCTGCCA ATTACCTCCA TACATAA

>Vigan.07G046900.01
MKKEDTVKLI SAEGFEFVVD KEAAMVSQTI HNMLTSPGSF SERQHGEVTF PEISTTILEK ICQYFYWHLQ FASGKETEFP
IEPELTLELM MAANYLHT*