GBrowse Details

Vigan.07G050500.01

Basic Information:
Name: Vigan.07G050500.01
Multiple alignment
Variant Information
Position: Chr07:3588513..3591633 (+ strand)
Length: 3121
Functional Information:
Description: Similar to outer envelope pore protein 16, chloroplastic-like. [XP_004487008.1, Cicer arietinum]
InterPro: Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:114.05,65.55,23.26,63.37,35.30,128.03,39.00,35.82
Arabidopsis thaliana homolog: AT2G28900.1
Automatic updates:
Name: NM_001248382 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499736 (LOC100499736), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001251226 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative outer envelope pore protein 16-1, chloroplastic (LOC100499674), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3588513..3588978 (+ strand)
Length: 466
Type: five_prime_UTR
Position: Chr07:3588979..3589083 (+ strand)
Length: 105
Type: CDS
Position: Chr07:3589163..3589214 (+ strand)
Length: 52
Type: CDS
Position: Chr07:3589488..3589519 (+ strand)
Length: 32
Type: CDS
Position: Chr07:3589799..3589832 (+ strand)
Length: 34
Type: CDS
Position: Chr07:3589924..3589991 (+ strand)
Length: 68
Type: CDS
Position: Chr07:3591164..3591304 (+ strand)
Length: 141
Type: CDS
Position: Chr07:3591305..3591633 (+ strand)
Length: 329
Type: three_prime_UTR


>Vigan.07G050500.01
AGAGACTGCA GAAACAAGCT TGAAGATAAT CGGATACTTG AAATCTTACT TCGGGACTAG TTAGTAAAAT ACTAAACCTA
GAAAACTGTT TTCCAGACAT CAATATTGAA TAATAAGTAT TTAGTTAACC TTAGAAAACA CGAAAAGCAA TCTAAAATGT
TTAATTTTTG TCGATTAAAG TAATTTCTTT TTGTTAATAG TTTGAATTAG CAGTAAATGA TATGATTAAG TAGTAATTTG
TGGTTGTTGC TCATAAAGAT GCTAACTTTT TTGTTGGTCA CTTTTCTTCC GTTGATTCAA TAAAAGAGTT GAAAAGGGAA
AAAGTTTGAG ATGAAAATGA TATTTGGGTA GGAGCCAATG AAGTGACAGG CGGTGAATCT GAACACTATC TGAGTTCTTC
TGGCTATGCA TGTGAATTGA ATGAACCCCA AAACAAAAGC AAGAGAATTT AAGAAGAGGG TGAAAGATGG CATGGGTAAG
GGTTTCAGGG CCTCCTAGGG TTGAAGTAGC CATTGACATG GGCAATCCAT TTCTCAATCT CACAGTTGAT GCTTTCCTCA
GGATCGGAAC CATCGCAGCC ACGCGCGCAG GTGCTGAAGA TACCTATCAT ATTATCCAAA AGAGGAATAT CTCGAGTCAT
GATTTTGAGA AAACGTTGAA GAAGATGTGT AAAGAAGGTG TATATTGGGG AACTGTAGCT GGCTTTTATG TTGGAACCGA
ATATGGGGTA GAGAGGATCC GTGGCACTAG GGACTGGAAG AATGCCATGA TTGGGGGTGC AGTAACTGGG GCCGTGGTAT
CTGCCGTCAG TAACAACAAG AAAGACAAGA TTGCAATAGA TGCCATTACG GGGGCAGCAA TTGCTACTGC TGCAGAGTTC
ATAAATTACC TTACTTGAAT GAATGAAAAT TGATGTGTTA CTAGTTTTCT TGCATGTTTT GGAAAGGGAT AGCACATTCA
GTCTCTCTTG TCATGTGTAC CAGTTCCGTT TTGATATTGG TGCAGTTACT TCTAAGTATG TTATTTATTT ACTCAGCTTT
CAGTTAAACC TATGTTTTTA TCTTATATTG GTCAATTACT TGTTCCGTAT GGTAATAGCT CGTCGTTGCA ATTTAGTAAA
GCTAAGCTTG AGTGTTCAGG CTGAAGAGGT TTAGGAATTT AGCCCTTTTA TGCTGACCGG TGAATCAATT TCGCGTATGC
GTTACTATAT ATGGCTTCAG ATTTTCA

>Vigan.07G050500.01
ATGGCATGGG TAAGGGTTTC AGGGCCTCCT AGGGTTGAAG TAGCCATTGA CATGGGCAAT CCATTTCTCA ATCTCACAGT
TGATGCTTTC CTCAGGATCG GAACCATCGC AGCCACGCGC GCAGGTGCTG AAGATACCTA TCATATTATC CAAAAGAGGA
ATATCTCGAG TCATGATTTT GAGAAAACGT TGAAGAAGAT GTGTAAAGAA GGTGTATATT GGGGAACTGT AGCTGGCTTT
TATGTTGGAA CCGAATATGG GGTAGAGAGG ATCCGTGGCA CTAGGGACTG GAAGAATGCC ATGATTGGGG GTGCAGTAAC
TGGGGCCGTG GTATCTGCCG TCAGTAACAA CAAGAAAGAC AAGATTGCAA TAGATGCCAT TACGGGGGCA GCAATTGCTA
CTGCTGCAGA GTTCATAAAT TACCTTACTT GA

>Vigan.07G050500.01
MAWVRVSGPP RVEVAIDMGN PFLNLTVDAF LRIGTIAATR AGAEDTYHII QKRNISSHDF EKTLKKMCKE GVYWGTVAGF
YVGTEYGVER IRGTRDWKNA MIGGAVTGAV VSAVSNNKKD KIAIDAITGA AIATAAEFIN YLT*