GBrowse Details

Vigan.07G052000.01

Basic Information:
Name: Vigan.07G052000.01
Multiple alignment
Variant Information
Position: Chr07:3719971..3724273 (+ strand)
Length: 4303
Functional Information:
Description: Similar to Uncharacterized protein. [C6T1V1, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.13,36.97,43.26,47.78,57.17,80.77,54.79,56.28
Automatic updates:
Name: NM_001251736 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500474 (LOC100500474), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3719971..3720118 (+ strand)
Length: 148
Type: five_prime_UTR
Position: Chr07:3720119..3720161 (+ strand)
Length: 43
Type: CDS
Position: Chr07:3720280..3720382 (+ strand)
Length: 103
Type: CDS
Position: Chr07:3720970..3721067 (+ strand)
Length: 98
Type: CDS
Position: Chr07:3721134..3721234 (+ strand)
Length: 101
Type: CDS
Position: Chr07:3722254..3722331 (+ strand)
Length: 78
Type: CDS
Position: Chr07:3723932..3724009 (+ strand)
Length: 78
Type: CDS
Position: Chr07:3724010..3724273 (+ strand)
Length: 264
Type: three_prime_UTR


>Vigan.07G052000.01
ATATCTACGT TACAGAAATC CCATACTATA AATACAATTC AACTATCTTT CATCTTTTGA AGTTCTCTCT TCTCTGTCTT
GTTTTTTTTT CTTCTCAATC TCACAACGCA ACCCATCCCT TCAACGCTCT CTCACCTCCC TTTCGTTGAT GGCGTCCCAA
GCAAGCCTCC TCCTTCAGAA GCAGCTCAAA GATCTCTGCA AGAACCCCGT TGATGGATTT TCCGCCGGTT TGGTCGACGA
AACCAACATT TTTGAATGGA GCGTCACTGT AATTGGGCCT CCTGACACTC TCTATGAGGG GGGATTTTTT AATGCCATTA
TGAGCTTTCC ACCCAACTAC CCAAATAGTC CGCCATCAGT GAAATTTACC TCTGAGATAT GGCATCCCAA TGTTTATCCT
GATGGGCGAG TTTGCATATC AATTCTTCAC CCTCCTGGTG ACGATCCGAA TGGTTACGAG CTTGCAAGTG AGCGCTGGAC
ACCTGTTCAT ACAGTAGAAA GTATAGTATT AAGTATCATA TCGATGCTTT CTAGTCCTAA TGATGAATCT CCTGCAAATG
TTGAAGCCGC GAAAGAGTGG AGAGACAGGA GAGATGAATT CAAGAAAAAA GTTAGCCGTT GCGTGCGGAA GTCACAAGAA
ATGTTGTGAT TTACAGCTGA ATTCTCATTC TGCTTCTGTG AACTAATGTA TGCAGTGGTT CACATGTTAC TGTTGGTCCC
AGTAGAGACT GCCATGTCTT GGAAAAACAA ACTGTATTCT AAGTGCTTTG TCACTAGTTT TATGAGAAAT TTAGTTTGTT
CATTTGCATG ACCTTATTGT TCAAATTATC ATTAGGTGCC AAGTTTTGCC TTCTGCTTAA TTTTCTGAGT GTTGATGTAC
CTGCTCCTAT ATTCTGACTT TTGTCTTTGC TTT

>Vigan.07G052000.01
ATGGCGTCCC AAGCAAGCCT CCTCCTTCAG AAGCAGCTCA AAGATCTCTG CAAGAACCCC GTTGATGGAT TTTCCGCCGG
TTTGGTCGAC GAAACCAACA TTTTTGAATG GAGCGTCACT GTAATTGGGC CTCCTGACAC TCTCTATGAG GGGGGATTTT
TTAATGCCAT TATGAGCTTT CCACCCAACT ACCCAAATAG TCCGCCATCA GTGAAATTTA CCTCTGAGAT ATGGCATCCC
AATGTTTATC CTGATGGGCG AGTTTGCATA TCAATTCTTC ACCCTCCTGG TGACGATCCG AATGGTTACG AGCTTGCAAG
TGAGCGCTGG ACACCTGTTC ATACAGTAGA AAGTATAGTA TTAAGTATCA TATCGATGCT TTCTAGTCCT AATGATGAAT
CTCCTGCAAA TGTTGAAGCC GCGAAAGAGT GGAGAGACAG GAGAGATGAA TTCAAGAAAA AAGTTAGCCG TTGCGTGCGG
AAGTCACAAG AAATGTTGTG A

>Vigan.07G052000.01
MASQASLLLQ KQLKDLCKNP VDGFSAGLVD ETNIFEWSVT VIGPPDTLYE GGFFNAIMSF PPNYPNSPPS VKFTSEIWHP
NVYPDGRVCI SILHPPGDDP NGYELASERW TPVHTVESIV LSIISMLSSP NDESPANVEA AKEWRDRRDE FKKKVSRCVR
KSQEML*