GBrowse Details

Vigan.07G052400.01

Basic Information:
Name: Vigan.07G052400.01
Multiple alignment
Variant Information
Position: Chr07:3739825..3744058 (+ strand)
Length: 4234
Functional Information:
Description: Similar to Uncharacterized protein. [I1M4U9, Glycine max]
GO: Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.27,0.41,29.68,17.85,21.39,54.46,15.51,104.76
Arabidopsis thaliana homolog: AT2G28760.2, AT3G46440.1, AT5G59290.2
Automatic updates:
Name: NM_001252978 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UDP-glucuronic acid decarboxylase 1-like (LOC100790835), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3739825..3740466 (+ strand)
Length: 642
Type: five_prime_UTR
Position: Chr07:3740467..3740577 (+ strand)
Length: 111
Type: CDS
Position: Chr07:3740809..3740895 (+ strand)
Length: 87
Type: CDS
Position: Chr07:3741013..3741100 (+ strand)
Length: 88
Type: CDS
Position: Chr07:3741692..3741783 (+ strand)
Length: 92
Type: CDS
Position: Chr07:3741860..3741924 (+ strand)
Length: 65
Type: CDS
Position: Chr07:3742001..3742089 (+ strand)
Length: 89
Type: CDS
Position: Chr07:3742250..3742327 (+ strand)
Length: 78
Type: CDS
Position: Chr07:3742444..3742537 (+ strand)
Length: 94
Type: CDS
Position: Chr07:3742793..3742859 (+ strand)
Length: 67
Type: CDS
Position: Chr07:3742936..3742999 (+ strand)
Length: 64
Type: CDS
Position: Chr07:3743110..3743150 (+ strand)
Length: 41
Type: CDS
Position: Chr07:3743414..3743599 (+ strand)
Length: 186
Type: CDS
Position: Chr07:3743600..3744058 (+ strand)
Length: 459
Type: three_prime_UTR


>Vigan.07G052400.01
TAGTAAATTA TAGTCATAGA AGCAAAATTC AATGTGGGGT TTGGTTTGGT TGTGTCGGGT TTGGTTTGGT TTTTCTTTTC
TGAATCTTTA CTGCAGAATA ATAGTTTGGT GTGATTTCCA TTACTATTGT CGTTGTCCAG GAGCTTTCAT TATGTCCTTC
AACTTTCCGT GACTTTCAAG CTTTCCAAAT TGAATTATGT TTCTCAGGGG GTAATTTTAT CTATTCTATG CTTAAAGTTT
TGATTTTTTT TTTATCAAAC TTCCAAATTG AATTTAGAAG TTTGGTGGAA TAATTTTTCA TATCTTGGTT GTCATTCATC
TATATAAATG GGTCTGCGAT CTTGCAGTAG TGGTAAGACA AGAGTGGTTA GGGTTTTGGT TTGGTGCTTT TGTGAAGCTA
TATATCTTGG TGTTCTTTTG AGATCAGGTG CTTGACTTGC TCTGTTACTT TCTTATTCTG ATTGCTTTTA ATGGCATTTG
TCACTCTTTT CCCTATTTGT TGCTCCAATT GACCCCTTTT AAATAGATAT CAGTTCACAT GATTTGGGTT GGGAAATTTA
TATCTTATTT AGTTTAAATG TTCTGTGCTA AGCATTGATC ACCCGAACAT TTGTGTAGGA ATTAATTTCT GAGGTCCAAA
CAATGGCAAC GGATTCTTCC AATGGTAATG GACATCACCA GACGACAACA TCAATAACAA CAACAAAGAC ACCTCCTTCA
CCATCTCCCC TGCGCTTTTC CAAATTTTTT CAGTCCAACA TGAGGATCTT GGTCACTGGA GGAGCTGGAT TCATTGGATC
TCACTTAGTT GACAGATTGA TGGAAAATGA AAAAAATGAG GTCATTGTTG CTGACAACTA CTTCACTGGA TCCAAGGACA
ACCTCAAAAA ATGGATTGGC CATCCAAGAT TTGAGCTTAT CCGTCATGAT GTCACGGAGC CTTTGCTGAT AGAGGTTGAT
CAGATCTACC ATCTTGCATG CCCTGCCTCT CCTATATTCT ACAAATACAA TCCAGTGAAG ACTATAAAGA CTAATGTCAT
AGGCACTCTC AATATGCTTG GGCTTGCAAA GAGAGTAGGA GCAAGGATTT TGCTTACATC AACTTCTGAG GTATATGGAG
ATCCTCTTGT GCACCCTCAA CCTGAAAGCT ATTGGGGAAA TGTTAACCCA ATTGGAGTCC GTAGTTGCTA TGATGAGGGG
AAACGGGTGG CTGAAACTTT GATGTTTGAT TACCATAGGC AGCATGGGAT TGAAATACGC ATTGCAAGAA TCTTTAACAC
ATATGGACCA CGCATGAATA TTGACGATGG GCGTGTTGTT AGCAATTTCA TTGCTCAAGC ACTTCGGGGG GAGTCCTTGA
CAGTCCAAAG TCCAGGAACT CAAACTCGAA GTTTCTGTTA TGTCTCTGAC CTGGTTGATG GTCTTATTCG CCTCATGGAA
GGGCCAAACA CCGGGCCAAT CAACCTTGGA AACCCCGGTG AATTTACAAT GATTGAACTT GCTCAGACTG TGAAAGAGCT
TATCAATCCT GATGTTGAAA TCAAGATGGT GGAGAACACT CCTGATGATC CGAGACAAAG AAAACCAGAC ATAACAAAAG
CAAAAGAATT GTTGGGATGG GAGCCAAAGG TGAAGTTGAG GGATGGTCTT CCTCTTATGG AAGAAAATTT CCGTCTGAGG
CTTGGAGTTG ACAAGAAGAA GTAGCTGAAT TTCTCTCCTT TGGTGGCATG TCAAAAGTAG AAATAATAAG TGAAATGAGT
CTGGCTGTTT TCAAAACCTT CATCATTATA GGTATTATGA TACTGAGAAC GTTGGGGTAC CTAAAATTTG GAGTCTATAG
CTATCACACT GCTATATTTT GTTTTCATTT GGCAAAAGAC TACATCATGT CACTTCAAAT TTTGCGGGTT AAAAGACGAG
TGAATTGAGC TTTTTTTTTC CTGTATTCTG GTTATATTTT CAACTTTTCT TTCTTTAAAG TCTTGGAGAA CTGAGCTTTA
GGATGTTATT TAGTGTGGAG TCATGCCATT TACTTTGAAG TGAAACTGAT TCACAATATC GAAATTCATT TTATGTTGTA
TAATTGACAA CGATTGTTTT GTAATAAAGT TATGTTCAAG CTTCATTATC ATCTTGTCTG GTGTTGGAAG GAACTAATCT
CAG

>Vigan.07G052400.01
ATGGCAACGG ATTCTTCCAA TGGTAATGGA CATCACCAGA CGACAACATC AATAACAACA ACAAAGACAC CTCCTTCACC
ATCTCCCCTG CGCTTTTCCA AATTTTTTCA GTCCAACATG AGGATCTTGG TCACTGGAGG AGCTGGATTC ATTGGATCTC
ACTTAGTTGA CAGATTGATG GAAAATGAAA AAAATGAGGT CATTGTTGCT GACAACTACT TCACTGGATC CAAGGACAAC
CTCAAAAAAT GGATTGGCCA TCCAAGATTT GAGCTTATCC GTCATGATGT CACGGAGCCT TTGCTGATAG AGGTTGATCA
GATCTACCAT CTTGCATGCC CTGCCTCTCC TATATTCTAC AAATACAATC CAGTGAAGAC TATAAAGACT AATGTCATAG
GCACTCTCAA TATGCTTGGG CTTGCAAAGA GAGTAGGAGC AAGGATTTTG CTTACATCAA CTTCTGAGGT ATATGGAGAT
CCTCTTGTGC ACCCTCAACC TGAAAGCTAT TGGGGAAATG TTAACCCAAT TGGAGTCCGT AGTTGCTATG ATGAGGGGAA
ACGGGTGGCT GAAACTTTGA TGTTTGATTA CCATAGGCAG CATGGGATTG AAATACGCAT TGCAAGAATC TTTAACACAT
ATGGACCACG CATGAATATT GACGATGGGC GTGTTGTTAG CAATTTCATT GCTCAAGCAC TTCGGGGGGA GTCCTTGACA
GTCCAAAGTC CAGGAACTCA AACTCGAAGT TTCTGTTATG TCTCTGACCT GGTTGATGGT CTTATTCGCC TCATGGAAGG
GCCAAACACC GGGCCAATCA ACCTTGGAAA CCCCGGTGAA TTTACAATGA TTGAACTTGC TCAGACTGTG AAAGAGCTTA
TCAATCCTGA TGTTGAAATC AAGATGGTGG AGAACACTCC TGATGATCCG AGACAAAGAA AACCAGACAT AACAAAAGCA
AAAGAATTGT TGGGATGGGA GCCAAAGGTG AAGTTGAGGG ATGGTCTTCC TCTTATGGAA GAAAATTTCC GTCTGAGGCT
TGGAGTTGAC AAGAAGAAGT AG

>Vigan.07G052400.01
MATDSSNGNG HHQTTTSITT TKTPPSPSPL RFSKFFQSNM RILVTGGAGF IGSHLVDRLM ENEKNEVIVA DNYFTGSKDN
LKKWIGHPRF ELIRHDVTEP LLIEVDQIYH LACPASPIFY KYNPVKTIKT NVIGTLNMLG LAKRVGARIL LTSTSEVYGD
PLVHPQPESY WGNVNPIGVR SCYDEGKRVA ETLMFDYHRQ HGIEIRIARI FNTYGPRMNI DDGRVVSNFI AQALRGESLT
VQSPGTQTRS FCYVSDLVDG LIRLMEGPNT GPINLGNPGE FTMIELAQTV KELINPDVEI KMVENTPDDP RQRKPDITKA
KELLGWEPKV KLRDGLPLME ENFRLRLGVD KKK*