VIGGS:GBrowse

Vigan.07G053300.01

Basic Information:

Name:	Vigan.07G053300.01 Multiple alignment Variant Information
Position:	Chr07:3796288..3801912 (+ strand)
Length:	5625

Functional Information:

Description:	Similar to Ras-related protein RAB8-5. [Q8W3J2, Nicotiana tabacum]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:43.98,33.05,47.56,37.85,57.73,41.42,57.74,39.30

Automatic updates:

Name:	BT098247 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-16F13 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:3796288..3796494 (+ strand)
Length:	207
Type:	five_prime_UTR

Position:	Chr07:3796583..3796640 (+ strand)
Length:	58
Type:	five_prime_UTR

Position:	Chr07:3796641..3796713 (+ strand)
Length:	73
Type:	CDS

Position:	Chr07:3797542..3797614 (+ strand)
Length:	73
Type:	CDS

Position:	Chr07:3797703..3797803 (+ strand)
Length:	101
Type:	CDS

Position:	Chr07:3800563..3800628 (+ strand)
Length:	66
Type:	CDS

Position:	Chr07:3800726..3800823 (+ strand)
Length:	98
Type:	CDS

Position:	Chr07:3801251..3801313 (+ strand)
Length:	63
Type:	CDS

Position:	Chr07:3801396..3801488 (+ strand)
Length:	93
Type:	CDS

Position:	Chr07:3801590..3801667 (+ strand)
Length:	78
Type:	CDS

Position:	Chr07:3801668..3801912 (+ strand)
Length:	245
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G053300.01
CTAATCCTTG TGTTCTGGTC AATAAAAAAT TCCCAAACTT TTTATTATAA AATAAATACA ACAAAATTAA ACATCGCTCT
TCTTCTTTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTAAAAATCT CCGCGGTCCT TCCGTTGAAC
TTTGGAGATC CCTCTCCCTC CCATTTTTCC TTTCCATTTC GGATCTGATA CTTGGGAATA CGAACTATAG TTTTGAAATC
GTGAGAGATT CATCGATCGA AGTTGATGGC GGCTCCACCG GCAAGGGCTC GTGCGGATTA CGACTATCTC ATAAAGCTTC
TCTTGATCGG CGATAGTGGT GTGGGAAAGA GTTGCCTTCT TCTACGATTC TCCGATGGTT CTTTCACAAC TAGTTTCATC
ACAACCATAG GCATTGATTT TAAGATAAGA ACCATTGAGC AGGATGGAAA ACGGATCAAG CTCCAAATTT GGGATACTGC
TGGTCAGGAG CGGTTCCGAA CAATTACAAC TGCTTACTAT CGTGGTGCTA TGGGCATATT GCTTGTGTAT GACGTTACAG
ATGAGTCTTC GTTTAACAAT ATCGGGAATT GGATTCGTAA CATTGAGCAG CATGCCTCAG ACAATGTTAA CAAGATACTT
GTGGGGAACA AAGCCGACAT GGATGAAAGC AAAAGGGCTG TGCCTACCTC CAAGGGACAA GCACTGGCCG ATGAGTATGG
AATCAAATTC TTTGAAACAA GTGCAAAGAC AAATCTAAAC GTGGAGGAAG TTTTCTTCTC GATTGCAAAA GATATAAAAC
AAAGGCTTGC TGACACTGAC TCTAAGTCAG AGCCAGCAGG AATTAAAATC AACCAACAGG ATCAAGCAAC GGCTGGGGAA
GTTGCACAAA AGTCAGCTTG CTGTGGTTGA GGAGGCAGCG TTATTGTCCA AGAACAAGAA GGAAGGAGGA AAATACATGT
ATGATGATGA TAAATTGATG ATGATTCGTG CTTTGCATTT CACGCTGTCA TTCTTTTATA GTTTCTTTCC TAGATGTTAT
TATATATTAA TTCAAAGCTA GATATGATTG TCTTTGCGCC TTGTGTTTGG TTGGGCCACA AATCCAATGA TCATTGATAT
TTTGAATGGT TAATTGCATT TATATTCTTT AAAAC

[show][hide][copy]CDS

>Vigan.07G053300.01
ATGGCGGCTC CACCGGCAAG GGCTCGTGCG GATTACGACT ATCTCATAAA GCTTCTCTTG ATCGGCGATA GTGGTGTGGG
AAAGAGTTGC CTTCTTCTAC GATTCTCCGA TGGTTCTTTC ACAACTAGTT TCATCACAAC CATAGGCATT GATTTTAAGA
TAAGAACCAT TGAGCAGGAT GGAAAACGGA TCAAGCTCCA AATTTGGGAT ACTGCTGGTC AGGAGCGGTT CCGAACAATT
ACAACTGCTT ACTATCGTGG TGCTATGGGC ATATTGCTTG TGTATGACGT TACAGATGAG TCTTCGTTTA ACAATATCGG
GAATTGGATT CGTAACATTG AGCAGCATGC CTCAGACAAT GTTAACAAGA TACTTGTGGG GAACAAAGCC GACATGGATG
AAAGCAAAAG GGCTGTGCCT ACCTCCAAGG GACAAGCACT GGCCGATGAG TATGGAATCA AATTCTTTGA AACAAGTGCA
AAGACAAATC TAAACGTGGA GGAAGTTTTC TTCTCGATTG CAAAAGATAT AAAACAAAGG CTTGCTGACA CTGACTCTAA
GTCAGAGCCA GCAGGAATTA AAATCAACCA ACAGGATCAA GCAACGGCTG GGGAAGTTGC ACAAAAGTCA GCTTGCTGTG
GTTGA

[show][hide][copy]PROTEIN

>Vigan.07G053300.01
MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIEQD GKRIKLQIWD TAGQERFRTI
TTAYYRGAMG ILLVYDVTDE SSFNNIGNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA
KTNLNVEEVF FSIAKDIKQR LADTDSKSEP AGIKINQQDQ ATAGEVAQKS ACCG*