GBrowse Details

Vigan.07G054600.01

Basic Information:
Name: Vigan.07G054600.01
Multiple alignment
Variant Information
Position: Chr07:3906777..3909847 (+ strand)
Length: 3071
Functional Information:
Description: Similar to Uncharacterized protein. [I1LQU7, Glycine max]
GO: Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro: 11-S seed storage protein, plant (IPR006044)
Cupin 1 (IPR006045)
RmlC-like cupin domain (IPR011051)
RmlC-like jelly roll fold (IPR014710)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.31,1.90,23.93,6.96,2.28,44.62,1.21,20.46
Arabidopsis thaliana homolog: AT1G07750.1, AT2G28680.1
Automatic updates:
Name: NM_001254161 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glutelin type-A 1-like (LOC100795038), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3906777..3907011 (+ strand)
Length: 235
Type: five_prime_UTR
Position: Chr07:3907012..3907207 (+ strand)
Length: 196
Type: CDS
Position: Chr07:3908292..3909012 (+ strand)
Length: 721
Type: CDS
Position: Chr07:3909407..3909560 (+ strand)
Length: 154
Type: CDS
Position: Chr07:3909561..3909847 (+ strand)
Length: 287
Type: three_prime_UTR


>Vigan.07G054600.01
TGTAAATCTT AATTATTTTT TATTATCATT AATTGAAGTG TTTAAAAAGA GAAAAGCAGT TGAATTACCT ACCTGCATTG
ATTTTGGATG AATCGTGAAG TGTCACTAAA ATGCTTCCGT TTCTGTTACA CTCACTTTTA TATATACCCA CGGTGTTTTC
ACGCTTCGTA TCAGATATAA GTGTAAACTC CAAAATCTCT CTGTAATCTC CTGGTCCACT GAACAAGCGA AGAAGATGGA
GATTGGTCTT TCTCCCAAGT TGGCGAAGAA AGTTTATGAA GGCGATGGTG GGTCTTACTT CGCCTGGTCC CCCTCTGAGC
TTCCCATGCT TCGCGAAGGT AACATTGGTG CAGCCAAACT TTCTCTGCAC AAAAATGGGT TCGCCCTTCC TCGATATTCT
GACTCCTCTA AAGTCGCCTA TGTTCTTCAG GGAAGTGGAG TGGCTGGAAT AGTGCTGCCT GAATCAGAAG AGAAGGTTGT
TGCAATCAAG AAGGGGGATG CGCTCGCACT CCCCTTTGGT GTTGTAACAT GGTGGTATAA CAAAGAAGAA ACTGAGTTGA
TTGTTCTGTT TCTTGGGGAC ACTTCCAAGG CTCACAAGGC TGGTGAATTC ACTGACTTTT TTCTGACTGG TTCCAATGGA
ATCTTCACGG GATTTTCCAC TGAGTTTGTG GGCAGAGCTT GGGACTTGGA AGAGAGTGAT GTCAAGACCC TTGTTGGAAA
ACAATCGGGC AAAGGGGTTG TGCAGTTGGA AGGAAGCATC ACACTACCCG AGCCTAAATC AGAGCACCGG ATTGGCATGG
CCTTGAACTG TGAAGAGGCT CCATTGGATG TTGACATCAA GGGTGGTGGA AGGGTTGTGG TGTTGAACAC CAAGAATCTT
CCCTTGGTTG GTGATGTTGG GCTAGGGGCT GACCTTGTGA GGTTGGATGG AGGAGCCATG TGCTCTCCGG GATTCTCTTG
TGATTCTGCT TTGCAGGTTA CTTATATTGT TAGGGGTAGT GGCCGGGTTC AGGTTGTTGG AGTTGATGGT CATAGGGTTT
TGGAGACAAC CATAAAAGCT GGTAATTTGT TCATTGTGCC AAGGTTTTTT GTGGTCTCAA AAATTGCTGA TCCAGAGGGA
ATGGAGTGGT TCTCTATAAT CACCACCCCT AATCCTGTAT TCACCCACTT GGCTGGAAGT TCTTCTGTGT GGAAGGCTTT
ATCACCTTCT GTTCTGCAAG CTGCTTTCAA TGTAGATTCA GGAGTGGAAC AACTGTTCCG TTCAAAAAGG ACTTCCGATG
CTATTTTCTT CCCTCCACCA AATTAGAATA AAAATTCCAC CAATCCACCA TTATCGTTTG GTTGTAAAGG TTCCCCCATC
CCGTCTGAAC GGAAAATAAA AGGGGTAACG GAATAACCAA ATTAGTGGAA TTACTTTACT GTTTGAAAGT CTTTTCTTTA
TTTTACTCGA ATTATTTCAC CTTACATGCT CTTTGATCCT TTCTTTTTAA CCAACTTTTA TTCTTATTCT TTTATATCAT
TCAAGATAGT GACCACAGTT ATATATTCCT AAACAACAGA TACTGGAGAT AGATGCTTAT AATTACAAAA AAC

>Vigan.07G054600.01
ATGGAGATTG GTCTTTCTCC CAAGTTGGCG AAGAAAGTTT ATGAAGGCGA TGGTGGGTCT TACTTCGCCT GGTCCCCCTC
TGAGCTTCCC ATGCTTCGCG AAGGTAACAT TGGTGCAGCC AAACTTTCTC TGCACAAAAA TGGGTTCGCC CTTCCTCGAT
ATTCTGACTC CTCTAAAGTC GCCTATGTTC TTCAGGGAAG TGGAGTGGCT GGAATAGTGC TGCCTGAATC AGAAGAGAAG
GTTGTTGCAA TCAAGAAGGG GGATGCGCTC GCACTCCCCT TTGGTGTTGT AACATGGTGG TATAACAAAG AAGAAACTGA
GTTGATTGTT CTGTTTCTTG GGGACACTTC CAAGGCTCAC AAGGCTGGTG AATTCACTGA CTTTTTTCTG ACTGGTTCCA
ATGGAATCTT CACGGGATTT TCCACTGAGT TTGTGGGCAG AGCTTGGGAC TTGGAAGAGA GTGATGTCAA GACCCTTGTT
GGAAAACAAT CGGGCAAAGG GGTTGTGCAG TTGGAAGGAA GCATCACACT ACCCGAGCCT AAATCAGAGC ACCGGATTGG
CATGGCCTTG AACTGTGAAG AGGCTCCATT GGATGTTGAC ATCAAGGGTG GTGGAAGGGT TGTGGTGTTG AACACCAAGA
ATCTTCCCTT GGTTGGTGAT GTTGGGCTAG GGGCTGACCT TGTGAGGTTG GATGGAGGAG CCATGTGCTC TCCGGGATTC
TCTTGTGATT CTGCTTTGCA GGTTACTTAT ATTGTTAGGG GTAGTGGCCG GGTTCAGGTT GTTGGAGTTG ATGGTCATAG
GGTTTTGGAG ACAACCATAA AAGCTGGTAA TTTGTTCATT GTGCCAAGGT TTTTTGTGGT CTCAAAAATT GCTGATCCAG
AGGGAATGGA GTGGTTCTCT ATAATCACCA CCCCTAATCC TGTATTCACC CACTTGGCTG GAAGTTCTTC TGTGTGGAAG
GCTTTATCAC CTTCTGTTCT GCAAGCTGCT TTCAATGTAG ATTCAGGAGT GGAACAACTG TTCCGTTCAA AAAGGACTTC
CGATGCTATT TTCTTCCCTC CACCAAATTA G

>Vigan.07G054600.01
MEIGLSPKLA KKVYEGDGGS YFAWSPSELP MLREGNIGAA KLSLHKNGFA LPRYSDSSKV AYVLQGSGVA GIVLPESEEK
VVAIKKGDAL ALPFGVVTWW YNKEETELIV LFLGDTSKAH KAGEFTDFFL TGSNGIFTGF STEFVGRAWD LEESDVKTLV
GKQSGKGVVQ LEGSITLPEP KSEHRIGMAL NCEEAPLDVD IKGGGRVVVL NTKNLPLVGD VGLGADLVRL DGGAMCSPGF
SCDSALQVTY IVRGSGRVQV VGVDGHRVLE TTIKAGNLFI VPRFFVVSKI ADPEGMEWFS IITTPNPVFT HLAGSSSVWK
ALSPSVLQAA FNVDSGVEQL FRSKRTSDAI FFPPPN*