VIGGS:GBrowse

Vigan.07G065100.01

Basic Information:

Name:	Vigan.07G065100.01 Multiple alignment Variant Information
Position:	Chr07:4975960..4978026 (+ strand)
Length:	2067

Functional Information:

Description:	Similar to Uncharacterized protein. [O64999, Glycine max]
GO:	Biological Process: transmembrane transport (GO:0055085)
GO:	Cellular Component: integral to membrane (GO:0016021)
InterPro:	Major facilitator superfamily (IPR011701)
	Major facilitator superfamily domain, general substrate transporter (IPR016196)
	Major facilitator superfamily domain (IPR020846)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.46,0.02,0.32,0.00,0.53,0.74,269.92,0.05
Arabidopsis thaliana homolog:	AT1G08090.1, AT1G08100.1, AT1G12940.1, AT3G45060.1, AT5G60770.1, AT5G60780.1

Automatic updates:

Name:	NM_001249515 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max NRT2 protein (NRT2), mRNA.
PubMed ID:	31165947 NCBI(pubmed)
PubMed ID:	9715532 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:4975960..4976080 (+ strand)
Length:	121
Type:	five_prime_UTR

Position:	Chr07:4976081..4976890 (+ strand)
Length:	810
Type:	CDS

Position:	Chr07:4977003..4977118 (+ strand)
Length:	116
Type:	CDS

Position:	Chr07:4977211..4977877 (+ strand)
Length:	667
Type:	CDS

Position:	Chr07:4977878..4978026 (+ strand)
Length:	149
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G065100.01
CTCTTACACA GTCAACTCCT TCCTCACTAT AAAGCCACAC CACACTCCTT CCTTCTTCTT CAAAGCACCA ACTCTTCAAT
TCCTATTCTA CCTCTTCATC CGCCATTGTT GTCAATATCA AATGGCTGAG ATTGAGGGCT CTCCTGGAAG CTCCATGCAT
GGAGTCACAG GAAGAGAGCA AACTTTTGTA GCCTCAGTTG CTTCTCCAAT GGTCCCCACC GACACCACAG CAAAGTTTGC
TCTCCCTGTA GATTCTGAAC ACAAGGCCAA GGTTTTCAAA CTCTTCTCCC TCGCCAATCC TCACATGAGA ACCTTCCACC
TTTCTTGGAT CTCCTTCTTC ACCTGCTTTG TCTCCACCTT CGCAGCAGCC CCTCTTGTTC CCATCATCCG CGACAACCTC
AATCTCACCA AAAGCGACAT TGGAAACGCC GGCGTTGCTT CTGTGTCCGG AAGCATTTTC TCTAGGCTCG CAATGGGTGC
AGTGTGCGAC CTCTTGGGTC CTCGTTATGG CTGCGCCTTC CTCATCATGC TCTCCGCTCC TACCGTGTTT TGCATGGCCT
TTGTGCAAGA TGCTTCTGGG TATATAGCGG TTCGGTTTTT GATAGGGTTC TCCTTGGCCA CGTTCGTGTC GTGCCAGTAC
TGGATGAGCA CCATGTTCAA CAGCAAGATC ATAGGACTTG CAAATGGAAC TGCGGCAGGG TGGGGTAACA TGGGTGGTGG
AGCCACTCAG CTCATAATGC CTTTGGTGTA TGAACTTATC AGAAGAGCTG GGGCTACTCC CTTCACCGCT TGGAGGATTG
CCTTCTTTGT TCCTGGTTGG TTGCATGTCA TCATGGGGAT CTTGGTCCTA ACTCTAGGTC AGGACTTGCC TGATGGAAAC
CTTGGAGCCT TGCAGAAAAA GGGTGATGTA GCCAGAGATA AGTTTTCTAA GGTACTATGG TATGCCATAA CAAATTACAG
AACATGGGTT TTTGCTCTTC TCTATGGGTA CTCAATGGGA GTTGAATTGA CAACAGACAA TGTCATTGCC GAGTATTTCT
ATGATAGATT TAATCTGAAG CTGCACACTG CTGGAATCAT CGCTGCCTCG TTTGGAATGG CAAACCTAGT TGCTCGACCC
TTTGGTGGGT ATGTTTCCGA TGTTGCAGCG AGGGTGTTTG GAATGAGGGG AAGATTGTGG ACGCTTTGGA TACTCCAAAC
CTTAGGAGGG GTTTTCTGTA TTTGGCTCGG GCGTGCGAAT TCTCTTCCTA TTGCTGTCTT GGCTATGATA TTGTTCTCTA
TAGGAGCTCA AGCTGCATGT GGTGCAACTT TTGGTATCAT TCCTTTCATC TCAAGAAGGT CTTTGGGGAT CATATCAGGT
CTTACTGGTG CGGGTGGAAA CTTTGGGTCT GGCCTCACCC AATTGGTTTT CTTTTCAACC TCGAAATTCT CCACTTCCAC
AGGTCTCTCG TTAATGGGAG CTATGATAGT GGCTTGCACT CTTCCTGTGA CTCTTGTTCA CTTCCCACAG TGGGGTAGCA
TGTTCCTACC TCCCTCAAAA GATGTCAACA AATCCACTGA AGAATTCTAT TACACCTCTG AATGGAATGA AGAGGAGAGG
CAGAAGGGCT TGCACCAGTC AAGTCTCAAG TTCGCCGAGA ATAGCCGATC TGAGAGAGGA AAACGCGTCG CATCAGCCCC
AACACCTCCA AATACAACTC CCACCCATGT CTAACTTAAA TTGAAACTTC ATCAAAGACA ATTCCATAAC AGTATTGAGA
CTTCAAATTC CAATATAAGT GAAGCTTTTT CTAATAAAAG ACCTTGTGCT TAGTTGTTCT TAGTTGTGCT TAGTGCCATA
CCATAATCAA TATATCTTGA TGC

[show][hide][copy]CDS

>Vigan.07G065100.01
ATGGCTGAGA TTGAGGGCTC TCCTGGAAGC TCCATGCATG GAGTCACAGG AAGAGAGCAA ACTTTTGTAG CCTCAGTTGC
TTCTCCAATG GTCCCCACCG ACACCACAGC AAAGTTTGCT CTCCCTGTAG ATTCTGAACA CAAGGCCAAG GTTTTCAAAC
TCTTCTCCCT CGCCAATCCT CACATGAGAA CCTTCCACCT TTCTTGGATC TCCTTCTTCA CCTGCTTTGT CTCCACCTTC
GCAGCAGCCC CTCTTGTTCC CATCATCCGC GACAACCTCA ATCTCACCAA AAGCGACATT GGAAACGCCG GCGTTGCTTC
TGTGTCCGGA AGCATTTTCT CTAGGCTCGC AATGGGTGCA GTGTGCGACC TCTTGGGTCC TCGTTATGGC TGCGCCTTCC
TCATCATGCT CTCCGCTCCT ACCGTGTTTT GCATGGCCTT TGTGCAAGAT GCTTCTGGGT ATATAGCGGT TCGGTTTTTG
ATAGGGTTCT CCTTGGCCAC GTTCGTGTCG TGCCAGTACT GGATGAGCAC CATGTTCAAC AGCAAGATCA TAGGACTTGC
AAATGGAACT GCGGCAGGGT GGGGTAACAT GGGTGGTGGA GCCACTCAGC TCATAATGCC TTTGGTGTAT GAACTTATCA
GAAGAGCTGG GGCTACTCCC TTCACCGCTT GGAGGATTGC CTTCTTTGTT CCTGGTTGGT TGCATGTCAT CATGGGGATC
TTGGTCCTAA CTCTAGGTCA GGACTTGCCT GATGGAAACC TTGGAGCCTT GCAGAAAAAG GGTGATGTAG CCAGAGATAA
GTTTTCTAAG GTACTATGGT ATGCCATAAC AAATTACAGA ACATGGGTTT TTGCTCTTCT CTATGGGTAC TCAATGGGAG
TTGAATTGAC AACAGACAAT GTCATTGCCG AGTATTTCTA TGATAGATTT AATCTGAAGC TGCACACTGC TGGAATCATC
GCTGCCTCGT TTGGAATGGC AAACCTAGTT GCTCGACCCT TTGGTGGGTA TGTTTCCGAT GTTGCAGCGA GGGTGTTTGG
AATGAGGGGA AGATTGTGGA CGCTTTGGAT ACTCCAAACC TTAGGAGGGG TTTTCTGTAT TTGGCTCGGG CGTGCGAATT
CTCTTCCTAT TGCTGTCTTG GCTATGATAT TGTTCTCTAT AGGAGCTCAA GCTGCATGTG GTGCAACTTT TGGTATCATT
CCTTTCATCT CAAGAAGGTC TTTGGGGATC ATATCAGGTC TTACTGGTGC GGGTGGAAAC TTTGGGTCTG GCCTCACCCA
ATTGGTTTTC TTTTCAACCT CGAAATTCTC CACTTCCACA GGTCTCTCGT TAATGGGAGC TATGATAGTG GCTTGCACTC
TTCCTGTGAC TCTTGTTCAC TTCCCACAGT GGGGTAGCAT GTTCCTACCT CCCTCAAAAG ATGTCAACAA ATCCACTGAA
GAATTCTATT ACACCTCTGA ATGGAATGAA GAGGAGAGGC AGAAGGGCTT GCACCAGTCA AGTCTCAAGT TCGCCGAGAA
TAGCCGATCT GAGAGAGGAA AACGCGTCGC ATCAGCCCCA ACACCTCCAA ATACAACTCC CACCCATGTC TAA

[show][hide][copy]PROTEIN

>Vigan.07G065100.01
MAEIEGSPGS SMHGVTGREQ TFVASVASPM VPTDTTAKFA LPVDSEHKAK VFKLFSLANP HMRTFHLSWI SFFTCFVSTF
AAAPLVPIIR DNLNLTKSDI GNAGVASVSG SIFSRLAMGA VCDLLGPRYG CAFLIMLSAP TVFCMAFVQD ASGYIAVRFL
IGFSLATFVS CQYWMSTMFN SKIIGLANGT AAGWGNMGGG ATQLIMPLVY ELIRRAGATP FTAWRIAFFV PGWLHVIMGI
LVLTLGQDLP DGNLGALQKK GDVARDKFSK VLWYAITNYR TWVFALLYGY SMGVELTTDN VIAEYFYDRF NLKLHTAGII
AASFGMANLV ARPFGGYVSD VAARVFGMRG RLWTLWILQT LGGVFCIWLG RANSLPIAVL AMILFSIGAQ AACGATFGII
PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSKFSTST GLSLMGAMIV ACTLPVTLVH FPQWGSMFLP PSKDVNKSTE
EFYYTSEWNE EERQKGLHQS SLKFAENSRS ERGKRVASAP TPPNTTPTHV *