GBrowse Details

Vigan.07G066400.01

Basic Information:
Name: Vigan.07G066400.01
Multiple alignment
Variant Information
Position: Chr07:5105752..5108969 (+ strand)
Length: 3218
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [V7BVW9, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.10,0.01,26.69,0.81,7.45,12.85,80.85,2.19
Automatic updates:
Name: NM_001253222 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 32-like (LOC100796768), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:5105752..5106321 (+ strand)
Length: 570
Type: five_prime_UTR
Position: Chr07:5106322..5106550 (+ strand)
Length: 229
Type: CDS
Position: Chr07:5106662..5106762 (+ strand)
Length: 101
Type: CDS
Position: Chr07:5106874..5107091 (+ strand)
Length: 218
Type: CDS
Position: Chr07:5107514..5107874 (+ strand)
Length: 361
Type: CDS
Position: Chr07:5107875..5108969 (+ strand)
Length: 1095
Type: three_prime_UTR


>Vigan.07G066400.01
CAAATGTGGA GTACCACCAG ATAGCTCTCA TTGATGTGTC ATTATGAAGG CATATATCCA ATCCTACCCC AATTCACATC
ACATCCTCCT AAACATAGTT GAGTAAGTTT TTCTCTTTAT CATATGCTTT GTCCAAGTGT TGTATGATAA CATGTAAAGC
TTCTGATAAG GTGAACCATT CAAAGGTCAA AATAAATGTC ACGAAAGTAA CCGTTAATGT GTCTTTAATC CTCCAAGTTT
TCTTCTCCTT CCCAATTGAC AAAGGATAAC AAACATTTAT TTACTTGAAA AGGATGTTCC TTCTCTGTAG GAAATGAAAG
CAGACAAGCA CACAACATAG GTTGAACTGT TTTTCCCTCT TGTTTATCAT CAAAAACCTG ATAAACTCTA GTCCCTCGTG
TACCCAACAC CTTATTAAAC CAAGTTATCG CCGTTTTTGG CACTGTGGGG CCTCCAAATC CCTCTATATA TTAACAGTGT
GCTTGCTCAT ACTCTTCATG AGCACCACCA ACTACCCTTT TGATTTTGTG TCCCACCCTG CATCTTAGCA GAGCCACTCT
GGTTACCACA ATGTCCTTGC TACCTTCCTC TTTCTTCCAC ATGGTTTCTC TCTTCTCTTT TCTTTTATTC TCAATCGTGA
TTCGTTGTAG TACTGCTCAG GGTCCACCTT CCCCTGGCTA CTACCCTAGT TCCAAAATTA GTCCTGTTAC CTTTGGTGAG
GGATTTAAAA ACCTTTGGGG ACCTCAGCAT CAGAAACTAG ACCAAGACTC ATTAACAATC TGGCTTGACA CTTACACAGG
GAGTGGATTC AAGTCACTTC ACTCTTACCG ATCTGGATAC TTTGGTGCTG CGGTTAAGCT TCAACCTGGT TATACAGCAG
GAGTCATAAC ATCTTTATAC CTTTCAAACA ACCAAGACTA CCCGGGAAAC CATGATGAAA TAGACATTGA ATTCCTTGGT
ACCACGCCAG ATAAGCCATA TGTCTTGCAG ACAAATGTGT ACATCAGAGG AAGTGGAGAT GGGAACATTA TAGGGAGAGA
GATGAGGTTT CACCTTTGGT TCGACCCAAC GGAAGATTTT CACAACTACG CTATTCTATG GGAACCCAGT GAGATCATCT
TTTTGGTGGA TGATGTCCCA ATAAGAAGGT ATCCTAGGAA GAGTGATGCC ACGTTCCCCA CAAGAGAAAT GCATGTGTAC
GGATCCATAT GGGATGCTTC TTCATGGGCT ACAGAGGGTG GAAAATACAA AGCTGATTAT AAATACCAAC CCTTCATTGG
TCAATACAAA AATTTCAAAC TTGAAGGTTG TACCACCGAA GCCTCCACCT CTTGCCAGCC ACCTTCAGCC TCACCTTTAG
GCTATGGAAG CCTGAGCTCT CAGCAACTTG CTGCAATGCA GTGGGTCCAA AACAACCACT TGGTCTATGA CTATTGCCAT
GATCCTGGGA GAGACCACAC CCTTACTCCA GAATGTTAAT TAAAGTTTAA GGAAAATACT TTCATAAATT TTAATGGACA
ACTGCAAATT TCAACATACA GAAACAAGGA ATATCTTGTT GCTTTGAAAA TAAAATTATT TCGAACTCTC TCCCAACTTA
AAAATCATTG GTTTGGTTGA GGTTGGTATG TTTCAAAGTT ACTTTTTTAC TTTTCGTACT ACCAAAAGGG TTTGTTCATG
GGGTGGATTC TGTGATGGTC CCACTTGCTA ATGGTAAGTG TAATTGAAAC AACAGTGAGC GTCCAAGCCC CCCAGAAAAG
ATTGTGATGT TTTTGTTGTT TCTGTAATTG TGTTGTTTGT GTCCCCACAA AAGATTGTGA TGTTTTTGTT GTTTCTGTAA
TGTGATGCAC TGTTGTTTAG TCTTTTTCCT GTTGAAATAA ATCTATTTGG ATGTTTTCCT GATTGGTATT TAGGATCAGA
AATGTGAAAA AAGGCCTTTG TCCCTCTGAA AGTAAGCTGT TGGAAGGAAC CTTGTTGTGG ACTTTTGTTG CTGAATTGGA
CAACCAAAGC AATTATTCAA TCTGTGACTC CATCAAAATA ATAACTAACC TTATATTCTG TTGTGTCGGT AGAACGCCCC
TACCAAGAAC TACTATGTTT TGTTTGAACC TACAAAATTT TCAAAAAGAA AGAATTAGGA TACCGTTTTA ATATAATTAT
CATTTTATTT GACATTTTCT CAGTTACAAC AACAGCAAAA AAAAAAGTCT GAATTTACGT GAACTATCAT AATTGCATCT
TAGGAATCTT TCAGTCTCTT GCTTTGGATT TCTAAATTTC ATCTTGTGAG TGATCAGACA CATTACATTG TCGTCGTTTG
CCTTTGTCTA TTTGTGGCAT TGTCAATTGT CACATGAATC GATTCAGGAT TTCCAAGAGC ATCATGGGGA GAACGATGCA
TTGCTACCCG AGATCAAACT TTCAAGTATT GCTTTGATTG GAAAATTAGG GTAAATCGCG GAACATAAAA TTCTGTCATG
ATTTCGTCCG CATCTTAAAA AATAAATAAA AAATATTTAA ACAGTCTTGA CTTCTGAATT TAAAATTACA GTGTAAAAAA
TATTTTACTT TTAC

>Vigan.07G066400.01
ATGTCCTTGC TACCTTCCTC TTTCTTCCAC ATGGTTTCTC TCTTCTCTTT TCTTTTATTC TCAATCGTGA TTCGTTGTAG
TACTGCTCAG GGTCCACCTT CCCCTGGCTA CTACCCTAGT TCCAAAATTA GTCCTGTTAC CTTTGGTGAG GGATTTAAAA
ACCTTTGGGG ACCTCAGCAT CAGAAACTAG ACCAAGACTC ATTAACAATC TGGCTTGACA CTTACACAGG GAGTGGATTC
AAGTCACTTC ACTCTTACCG ATCTGGATAC TTTGGTGCTG CGGTTAAGCT TCAACCTGGT TATACAGCAG GAGTCATAAC
ATCTTTATAC CTTTCAAACA ACCAAGACTA CCCGGGAAAC CATGATGAAA TAGACATTGA ATTCCTTGGT ACCACGCCAG
ATAAGCCATA TGTCTTGCAG ACAAATGTGT ACATCAGAGG AAGTGGAGAT GGGAACATTA TAGGGAGAGA GATGAGGTTT
CACCTTTGGT TCGACCCAAC GGAAGATTTT CACAACTACG CTATTCTATG GGAACCCAGT GAGATCATCT TTTTGGTGGA
TGATGTCCCA ATAAGAAGGT ATCCTAGGAA GAGTGATGCC ACGTTCCCCA CAAGAGAAAT GCATGTGTAC GGATCCATAT
GGGATGCTTC TTCATGGGCT ACAGAGGGTG GAAAATACAA AGCTGATTAT AAATACCAAC CCTTCATTGG TCAATACAAA
AATTTCAAAC TTGAAGGTTG TACCACCGAA GCCTCCACCT CTTGCCAGCC ACCTTCAGCC TCACCTTTAG GCTATGGAAG
CCTGAGCTCT CAGCAACTTG CTGCAATGCA GTGGGTCCAA AACAACCACT TGGTCTATGA CTATTGCCAT GATCCTGGGA
GAGACCACAC CCTTACTCCA GAATGTTAA

>Vigan.07G066400.01
MSLLPSSFFH MVSLFSFLLF SIVIRCSTAQ GPPSPGYYPS SKISPVTFGE GFKNLWGPQH QKLDQDSLTI WLDTYTGSGF
KSLHSYRSGY FGAAVKLQPG YTAGVITSLY LSNNQDYPGN HDEIDIEFLG TTPDKPYVLQ TNVYIRGSGD GNIIGREMRF
HLWFDPTEDF HNYAILWEPS EIIFLVDDVP IRRYPRKSDA TFPTREMHVY GSIWDASSWA TEGGKYKADY KYQPFIGQYK
NFKLEGCTTE ASTSCQPPSA SPLGYGSLSS QQLAAMQWVQ NNHLVYDYCH DPGRDHTLTP EC*