VIGGS:GBrowse

Vigan.07G071100.01

Basic Information:

Name:	Vigan.07G071100.01 Multiple alignment Variant Information
Position:	Chr07:5648199..5649108 (- strand)
Length:	910

Functional Information:

Description:	Similar to Stress responsive A/B Barrel Domain. [XP_007015930.1, Theobroma cacao]
InterPro:	Dimeric alpha-beta barrel (IPR011008)
InterPro:	Stress responsive alpha-beta barrel (IPR013097)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.47,9.55,77.08,8.50,0.00,29.92,9.69,73.70
Arabidopsis thaliana homolog:	AT5G22580.1

Automatic updates:

Name:	NM_001249584 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500080 (LOC100500080), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:5648199..5648375 (- strand)
Length:	177
Type:	three_prime_UTR

Position:	Chr07:5648376..5648574 (- strand)
Length:	199
Type:	CDS

Position:	Chr07:5648909..5649036 (- strand)
Length:	128
Type:	CDS

Position:	Chr07:5649037..5649108 (- strand)
Length:	72
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G071100.01
GACAAACAGC AGATCAAGAA CGTGAGCTAA ATTCTTAATA TATATTTGGC TTAAAGGAAC AAGCTTTGTG GTATGCTAGC
AATGGGGGAA TTCAAACACT TTGTAATTGT TAAGTTCAAG GAAGGTGTGG CAGTTGATGA GCTCACTAAA GGGATGGAGA
AGTTGGTCTC AGAGATTGAT GCTGTCAAGT CCTTTGAATG GGGAAGGGAC ATTGAAAGCT TAGATGTGCT GAGACAAGGT
TTCACTCATG CCTTTTTAAT GACATTCAAC AAGAAAGAAG ACTTTGCTGC ATTTCAAAGC CATCCAAATC ATGTGGAGTT
CTCCACAACA TTTTCAGCAG CAATTGAGAA CATTGTGCTG CTGGATTTCC CATCTACTCT TGTCAAGGCC CCAGCATGAT
CCTCAACATA ATATTCCACC AATAAAAAAA CCCTCTTCAA ATTTGTTTAG TGTATGTTTT TGCTTGTGTT TCTCTATCTG
TAGTTCTGCC ATGAGTTGTT GTTACTGCAA TATCTCATGC AATTTGTAAC CCGTAGTATT ATGGATTATG AATTATAATG
AACTATTTTG CCTTAT

[show][hide][copy]CDS

>Vigan.07G071100.01
ATGCTAGCAA TGGGGGAATT CAAACACTTT GTAATTGTTA AGTTCAAGGA AGGTGTGGCA GTTGATGAGC TCACTAAAGG
GATGGAGAAG TTGGTCTCAG AGATTGATGC TGTCAAGTCC TTTGAATGGG GAAGGGACAT TGAAAGCTTA GATGTGCTGA
GACAAGGTTT CACTCATGCC TTTTTAATGA CATTCAACAA GAAAGAAGAC TTTGCTGCAT TTCAAAGCCA TCCAAATCAT
GTGGAGTTCT CCACAACATT TTCAGCAGCA ATTGAGAACA TTGTGCTGCT GGATTTCCCA TCTACTCTTG TCAAGGCCCC
AGCATGA

[show][hide][copy]PROTEIN

>Vigan.07G071100.01
MLAMGEFKHF VIVKFKEGVA VDELTKGMEK LVSEIDAVKS FEWGRDIESL DVLRQGFTHA FLMTFNKKED FAAFQSHPNH
VEFSTTFSAA IENIVLLDFP STLVKAPA*