VIGGS:GBrowse

Vigan.07G080900.01

Basic Information:

Name:	Vigan.07G080900.01 Multiple alignment Variant Information
Position:	Chr07:6656379..6658716 (+ strand)
Length:	2338

Functional Information:

Description:	Similar to dnaJ protein homolog isoform X2. [XP_006365673.1, Solanum tuberosum]
GO:	Biological Process: protein folding (GO:0006457)
	Biological Process: response to heat (GO:0009408)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: heat shock protein binding (GO:0031072)
	Molecular Function: unfolded protein binding (GO:0051082)
InterPro:	Heat shock protein DnaJ, cysteine-rich domain (IPR001305)
	DnaJ domain (IPR001623)
	Chaperone DnaJ, C-terminal (IPR002939)
	HSP40/DnaJ peptide-binding (IPR008971)
	Chaperone DnaJ (IPR012724)
	DnaJ domain, conserved site (IPR018253)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:33.62,95.25,112.67,51.79,44.61,34.63,22.52,16.30
Arabidopsis thaliana homolog:	AT3G44110.1, AT5G22060.1

Automatic updates:

Name:	NM_001253335 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max chaperone protein dnaJ (LOC100818805), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:6656379..6656655 (+ strand)
Length:	277
Type:	five_prime_UTR

Position:	Chr07:6656656..6656805 (+ strand)
Length:	150
Type:	CDS

Position:	Chr07:6657101..6657269 (+ strand)
Length:	169
Type:	CDS

Position:	Chr07:6657370..6657508 (+ strand)
Length:	139
Type:	CDS

Position:	Chr07:6657601..6657877 (+ strand)
Length:	277
Type:	CDS

Position:	Chr07:6657968..6658166 (+ strand)
Length:	199
Type:	CDS

Position:	Chr07:6658251..6658573 (+ strand)
Length:	323
Type:	CDS

Position:	Chr07:6658574..6658716 (+ strand)
Length:	143
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G080900.01
CAAAGCTTCA GATGGATCCA ACGGTCCACA ATTACTCACA AAAACTTGGC GAATAAAAAT TCTAGATCCT TCTGCGCAAC
CTAAGAATAT TTGAAGTTGG ATGGTGGCCA TTTAACAATC AAGTATGGAT ACTATATAAA CATGCCGAGA CGGGTAATTA
GTGAATAACA TTTGCTCGTT GGGTTTATTT CTTCTTGCCT TGCATTCTTT GGAGATCTAG TGCAGCCACA ACACGCGGTG
AAAACTAGGG TTAAGGATTC TAAGGTAGAA GAACAAGATG TTTGGGAGAG CGCCCAAGAA AAGCGACAGC ACTAGGTACT
ATGAAATCCT TGGCGTTGCC AAGAATGCGT CGCAGGAGGA TTTGAAAAAG GCTTACAAGA AAGCCGCCAT AAAAAATCAC
CCCGACAAAG GCGGTGATCC CGAGAAGTTC AAAGAGCTTG CTCAAGCCTA TGAGGTTCTG AGTGACCCTG AGAAACGTGA
GGTTTACGAT ACTTACGGTG AAGATGCTCT TAAAGAGGGA ATGGGTGGCG GCGGCGGTGG CCACGACCCC TTTGATATCT
TCAGTTCGTT CTTTGGTGGA AATCCGTTTG GTGGGGGTGG TAGCAGTAGA GGAAGGAGAC AGAGACGGGG AGAAGATGTG
GTTCACCCTC TGAAGGTCTC TCTGGAGGAT CTTTATCTTG GAACGTCTAA GAAACTCTCT CTCTCACGAA ATGTGTTGTG
CTCAAAATGC AATGGGAAGG GTTCAAAGTC TGGGGCTTCA ATGACTTGTG CTGGTTGCCA GGGTAGTGGT ATGAAGTTGT
CGATCAGGCA CCTTCGTCCT TCTATGATTC AGCAAGTGCA ACATGTTTGC AATGAGTGTA AGGGCACCGG AGAGACCATC
AGTGACAGAG ACCGATGCAC TCAATGCAAG GGAGAGAAGG TTGTTCAGGA GAAGAAAGTA CTTGAAGTTG TTGTGGAGAA
AGGAATGCAG AATGGACAGA AGATTACATT CCCTGGTGAA GCTGATGAAG CACCTGATAC AATCACTGGG GATATTGTAT
TTGTCTTGCA ACAGAAGGAA CATCCAAAGT TCAAAAGAAA GGCTGAAGAC CTTTTTGTCG AGCATACTTT GTCTCTCACT
GAGGCTCTAT GTGGTTTCCA GTTTGTGCTG GCTCACTTGG ATGGTCGACA ACTCCTTATC AAATCAAACC CTGGGGAGGT
TGTCAAGCCT GATTCATACA AGGCTATAAA CGATGAGGGA ATGCCAATGT ACCAGAGGCC GTTCATGAAG GGGAGGCTTT
ACATTCATTT CACTGTGGAA TTTCCTGATT CTCTGAGCCT TGATCAGGTG AAGTCCATAG AGACTGTTTT GCCAGCAAAG
ACTTCATCAC AAAAGTTGAC AGACATGGAG CTGGACGAGT GTGAAGAGAC TACACTTCAT GATGTGAACA TGGAGGAAGA
GTCAAGGAGG AGGCAACAAA CTTCGCAGGA GGCGTACGAG GAGGATGAGG ACATGCATGG CGGTGCTCAG AGAGTACAGT
GCGCTCAGCA GTAATGAATG AGCCACAGGA GCATAGCAGA GTAGTGTGAT GATCTTGATT ATCATTTTTA AACATAATTT
GTGTTTGATC CATCGATTTT GACAACCAAA CACCTTACCA TTTATTCTTC GACAAATTAT TTTACAGAAG GCATCTA

[show][hide][copy]CDS

>Vigan.07G080900.01
ATGTTTGGGA GAGCGCCCAA GAAAAGCGAC AGCACTAGGT ACTATGAAAT CCTTGGCGTT GCCAAGAATG CGTCGCAGGA
GGATTTGAAA AAGGCTTACA AGAAAGCCGC CATAAAAAAT CACCCCGACA AAGGCGGTGA TCCCGAGAAG TTCAAAGAGC
TTGCTCAAGC CTATGAGGTT CTGAGTGACC CTGAGAAACG TGAGGTTTAC GATACTTACG GTGAAGATGC TCTTAAAGAG
GGAATGGGTG GCGGCGGCGG TGGCCACGAC CCCTTTGATA TCTTCAGTTC GTTCTTTGGT GGAAATCCGT TTGGTGGGGG
TGGTAGCAGT AGAGGAAGGA GACAGAGACG GGGAGAAGAT GTGGTTCACC CTCTGAAGGT CTCTCTGGAG GATCTTTATC
TTGGAACGTC TAAGAAACTC TCTCTCTCAC GAAATGTGTT GTGCTCAAAA TGCAATGGGA AGGGTTCAAA GTCTGGGGCT
TCAATGACTT GTGCTGGTTG CCAGGGTAGT GGTATGAAGT TGTCGATCAG GCACCTTCGT CCTTCTATGA TTCAGCAAGT
GCAACATGTT TGCAATGAGT GTAAGGGCAC CGGAGAGACC ATCAGTGACA GAGACCGATG CACTCAATGC AAGGGAGAGA
AGGTTGTTCA GGAGAAGAAA GTACTTGAAG TTGTTGTGGA GAAAGGAATG CAGAATGGAC AGAAGATTAC ATTCCCTGGT
GAAGCTGATG AAGCACCTGA TACAATCACT GGGGATATTG TATTTGTCTT GCAACAGAAG GAACATCCAA AGTTCAAAAG
AAAGGCTGAA GACCTTTTTG TCGAGCATAC TTTGTCTCTC ACTGAGGCTC TATGTGGTTT CCAGTTTGTG CTGGCTCACT
TGGATGGTCG ACAACTCCTT ATCAAATCAA ACCCTGGGGA GGTTGTCAAG CCTGATTCAT ACAAGGCTAT AAACGATGAG
GGAATGCCAA TGTACCAGAG GCCGTTCATG AAGGGGAGGC TTTACATTCA TTTCACTGTG GAATTTCCTG ATTCTCTGAG
CCTTGATCAG GTGAAGTCCA TAGAGACTGT TTTGCCAGCA AAGACTTCAT CACAAAAGTT GACAGACATG GAGCTGGACG
AGTGTGAAGA GACTACACTT CATGATGTGA ACATGGAGGA AGAGTCAAGG AGGAGGCAAC AAACTTCGCA GGAGGCGTAC
GAGGAGGATG AGGACATGCA TGGCGGTGCT CAGAGAGTAC AGTGCGCTCA GCAGTAA

[show][hide][copy]PROTEIN

>Vigan.07G080900.01
MFGRAPKKSD STRYYEILGV AKNASQEDLK KAYKKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREVY DTYGEDALKE
GMGGGGGGHD PFDIFSSFFG GNPFGGGGSS RGRRQRRGED VVHPLKVSLE DLYLGTSKKL SLSRNVLCSK CNGKGSKSGA
SMTCAGCQGS GMKLSIRHLR PSMIQQVQHV CNECKGTGET ISDRDRCTQC KGEKVVQEKK VLEVVVEKGM QNGQKITFPG
EADEAPDTIT GDIVFVLQQK EHPKFKRKAE DLFVEHTLSL TEALCGFQFV LAHLDGRQLL IKSNPGEVVK PDSYKAINDE
GMPMYQRPFM KGRLYIHFTV EFPDSLSLDQ VKSIETVLPA KTSSQKLTDM ELDECEETTL HDVNMEEESR RRQQTSQEAY
EEDEDMHGGA QRVQCAQQ*