GBrowse Details

Vigan.07G082100.01

Basic Information:
Name: Vigan.07G082100.01
Multiple alignment
Variant Information
Position: Chr07:6785780..6789015 (+ strand)
Length: 3236
Functional Information:
Description: Similar to Membrane protein, putative. [G7IRI8, Medicago truncatula]
InterPro: Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:106.97,60.61,31.09,34.88,34.43,60.23,98.11,37.90
Arabidopsis thaliana homolog: AT3G21610.1
Automatic updates:
Name: NM_001251170 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306390 (LOC100306390), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:6785780..6785994 (+ strand)
Length: 215
Type: five_prime_UTR
Position: Chr07:6785995..6786140 (+ strand)
Length: 146
Type: CDS
Position: Chr07:6787069..6787225 (+ strand)
Length: 157
Type: CDS
Position: Chr07:6787931..6787981 (+ strand)
Length: 51
Type: CDS
Position: Chr07:6788087..6788179 (+ strand)
Length: 93
Type: CDS
Position: Chr07:6788488..6788547 (+ strand)
Length: 60
Type: CDS
Position: Chr07:6788548..6789015 (+ strand)
Length: 468
Type: three_prime_UTR


>Vigan.07G082100.01
GGGGAAAAAT GCATTTATTT TATTGAATCT CCAATGTGCA CTTTGATTTA ATTTATGAGT TGCAGTGGGA CATATAAAAT
GGGAGAATAT TAATTCCAAC AGGCTTTTTT GTCACTATAG AGTGAGGTAT CAGCAGAGAC GCGCGAGGGG AAGGTGGAGT
GCGGGTGAGG GTAAGCGTTC CGTTAGTTAC GTTAAGGTGT TATCGAGTTT GGTACATGGA CGAAGTGATG ACCATGGCGG
ATGTCGCAGC CAACACGCAA GGATCAACCA CCGCCTCTTC TTCCCTCCCT TCCAATTTCC CTCTCATCTC CGCCTTCCTC
TCCTTTGCCC TCGCACAGTT CCTCAAGATC TTCACCACCT GGTATAAGGA AAAGCGATGG GATTCTAAAA GGATGCTTGA
TTCGGGTGGA ATGCCTTCGT CACATTCTGC AACGGTGTCA GCTCTGGCTG TTGCTATAGG TCTCCAAGAA GGGGCAGGGT
CATCTGCTTT TGCTGTTGCC GTGGTCTTGG CATGTATTGT TATGTATGAT GCGTCAGGAG TTAGACTTCA TGCAGGTCGG
CAAGCAGAAT TGCTTAATCA AATTGTGTGC GAACTACCTC CTGAACATCC TTTGTCGAAT GTCAGACCGC TGCGTGATTC
ACTTGGTCAT ACTCCATTTC AGGTTGTTGC TGGTGGGGTA TTGGGATGCA TTATAGCATT TCTTATGAGA AAATCAAATT
AAGATCCTTG TGATGTGGCT GATACTAGTC TTCAGTGTCA AAATTGTCGG TGCATGAACG AAACGAGAGC ATCATGGAAA
GGATATAAAA AGCTGTTGAT GCAAGTTGCA AGTGTATAAA GTGCTTTGAT GGTTCCTGAG GGAGATCCTG CGTCCAGACT
TTTGGACATT CAGATTTCTC TTGTACACAT TAATTAATCG TTTTGTTAGT CCTGTCTTAA TTGATCGTTA CACAATTTGG
GATCACACGG GCTATTCTTT GGCTTGTTGC AAAGCACTCA AGGTTGCATT TTATATTTCA TCCTTAAGTA GATTAATACT
TATGTTTCTA CATGGTTATC ACAATTTTGT TTTTCAAGTT TTAAGCATCT GAATTATACT GTGTCATTTT GATTGGTTGG
CCGGGTTTAT GGAGTAGTAG CTATTAACAT TTTATTGCTA ATTTGATTGT CATAAATGAT CACTCTTTGA 

>Vigan.07G082100.01
ATGGACGAAG TGATGACCAT GGCGGATGTC GCAGCCAACA CGCAAGGATC AACCACCGCC TCTTCTTCCC TCCCTTCCAA
TTTCCCTCTC ATCTCCGCCT TCCTCTCCTT TGCCCTCGCA CAGTTCCTCA AGATCTTCAC CACCTGGTAT AAGGAAAAGC
GATGGGATTC TAAAAGGATG CTTGATTCGG GTGGAATGCC TTCGTCACAT TCTGCAACGG TGTCAGCTCT GGCTGTTGCT
ATAGGTCTCC AAGAAGGGGC AGGGTCATCT GCTTTTGCTG TTGCCGTGGT CTTGGCATGT ATTGTTATGT ATGATGCGTC
AGGAGTTAGA CTTCATGCAG GTCGGCAAGC AGAATTGCTT AATCAAATTG TGTGCGAACT ACCTCCTGAA CATCCTTTGT
CGAATGTCAG ACCGCTGCGT GATTCACTTG GTCATACTCC ATTTCAGGTT GTTGCTGGTG GGGTATTGGG ATGCATTATA
GCATTTCTTA TGAGAAAATC AAATTAA

>Vigan.07G082100.01
MDEVMTMADV AANTQGSTTA SSSLPSNFPL ISAFLSFALA QFLKIFTTWY KEKRWDSKRM LDSGGMPSSH SATVSALAVA
IGLQEGAGSS AFAVAVVLAC IVMYDASGVR LHAGRQAELL NQIVCELPPE HPLSNVRPLR DSLGHTPFQV VAGGVLGCII
AFLMRKSN*