VIGGS:GBrowse

Vigan.07G085500.01

Basic Information:

Name:	Vigan.07G085500.01 Multiple alignment Variant Information
Position:	Chr07:7200740..7201906 (+ strand)
Length:	1167

Functional Information:

Description:	Similar to Melanoma inhibitory activity protein 3, putative. [XP_007045610.1, Theobroma cacao]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.03,0.15,0.04,0.11,0.37,0.19,2.75
Arabidopsis thaliana homolog:	AT3G21710.2

Automatic updates:

Name:	NM_001248642 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306218 (LOC100306218), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:7200740..7200878 (+ strand)
Length:	139
Type:	five_prime_UTR

Position:	Chr07:7200879..7201217 (+ strand)
Length:	339
Type:	CDS

Position:	Chr07:7201341..7201403 (+ strand)
Length:	63
Type:	CDS

Position:	Chr07:7201519..7201674 (+ strand)
Length:	156
Type:	CDS

Position:	Chr07:7201675..7201906 (+ strand)
Length:	232
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G085500.01
ATTTGTCTCT CTCTGCTGGT GGTGTGCACT GACATGTATC TCTATTCATA GAACATTATT CTAAGCTCAG TGTTATAAAT
CCCTCCAGAG AAGAAGTCTC TCGCAATCTG AAAGCAAAAC TCTCTCTCTA TCTCTCCTGA TGGAGCATTG TCTGAATCCT
TCTATGGGAA AAGCAGTGTC TGGAAGTGGC AATGAGGAAA GCGGGTGGAC TTCTTACTTG GAAGATTTTT CTAAGGGCAT
GGAGGAACAA AGTTACTGTT CCAGCTTGGG TGGCTCCTCT TTGGTCTCAG ATGCTGCTTC TTCTGCTGCA TGGAAACTCT
CACATCACAA TCACCTTCTG TCATACCCTT CTGTTAGAGT TACGGACTCA TCTAATAATA TCTCTAAGAA ACTTCGTTTC
AAGAAAACAA GAACCCAGCA GATATCAGAT GATGATCCTT TGGAAGACAC TGCCAGCTCC CCTGTCAATA GTCCCAAGGT
AGGGGACTTG AAGATTTCCA GCAAGATTGA CGATGATCAA CTTGATGGTT CTACTTCTAG GGGTAAGGGT TTTCACTCAG
AGCATTACCC AAACCTGCTG CAGGCTGATG AGTGTGACAT GAACTTCAAT GAAAACAATG TTGAGTGCAC CGCAGACTTG
AAGAAAAGGG GTCTATGCCT TGTTCCTTGG TCCATGTTGG TTAATTATTA TGGGTGAATG CTACTTTTGT CTACTTTGTG
TTCTTCTATG TAGCTTGACT TCTCAGGTCA CGTTGCTGTT AACATAACAT GATCAGTGAC AGTAAACCCC TGTATTATAC
CAATCATTGT TAACATGATC ATAACCTGAG ACCATAATTT ATGTTTTGCT TGTTTCTTCA TGAACACAGA AACCAAGATC
ATGTTTGTGA CATTCTTCAA GGGAAGTAAG TATATATATG TTCTCAAAA

[show][hide][copy]CDS

>Vigan.07G085500.01
ATGGAGCATT GTCTGAATCC TTCTATGGGA AAAGCAGTGT CTGGAAGTGG CAATGAGGAA AGCGGGTGGA CTTCTTACTT
GGAAGATTTT TCTAAGGGCA TGGAGGAACA AAGTTACTGT TCCAGCTTGG GTGGCTCCTC TTTGGTCTCA GATGCTGCTT
CTTCTGCTGC ATGGAAACTC TCACATCACA ATCACCTTCT GTCATACCCT TCTGTTAGAG TTACGGACTC ATCTAATAAT
ATCTCTAAGA AACTTCGTTT CAAGAAAACA AGAACCCAGC AGATATCAGA TGATGATCCT TTGGAAGACA CTGCCAGCTC
CCCTGTCAAT AGTCCCAAGG TAGGGGACTT GAAGATTTCC AGCAAGATTG ACGATGATCA ACTTGATGGT TCTACTTCTA
GGGGTAAGGG TTTTCACTCA GAGCATTACC CAAACCTGCT GCAGGCTGAT GAGTGTGACA TGAACTTCAA TGAAAACAAT
GTTGAGTGCA CCGCAGACTT GAAGAAAAGG GGTCTATGCC TTGTTCCTTG GTCCATGTTG GTTAATTATT ATGGGTGA

[show][hide][copy]PROTEIN

>Vigan.07G085500.01
MEHCLNPSMG KAVSGSGNEE SGWTSYLEDF SKGMEEQSYC SSLGGSSLVS DAASSAAWKL SHHNHLLSYP SVRVTDSSNN
ISKKLRFKKT RTQQISDDDP LEDTASSPVN SPKVGDLKIS SKIDDDQLDG STSRGKGFHS EHYPNLLQAD ECDMNFNENN
VECTADLKKR GLCLVPWSML VNYYG*