GBrowse Details

Vigan.07G085800.01

Basic Information:
Name: Vigan.07G085800.01
Multiple alignment
Variant Information
Position: Chr07:7226600..7230822 (+ strand)
Length: 4223
Functional Information:
Description: Similar to Uncharacterized protein. [I1LU69, Glycine max]
GO: Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: membrane (GO:0016020)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Syntaxin, N-terminal domain (IPR006011)
t-SNARE (IPR010989)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.08,22.11,11.19,9.25,19.55,8.60,22.94,10.91
Automatic updates:
Name: NM_001254606 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative syntaxin-131-like (LOC100807404), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:7226600..7227317 (+ strand)
Length: 718
Type: five_prime_UTR
Position: Chr07:7227318..7227335 (+ strand)
Length: 18
Type: CDS
Position: Chr07:7227881..7227994 (+ strand)
Length: 114
Type: CDS
Position: Chr07:7228237..7228293 (+ strand)
Length: 57
Type: CDS
Position: Chr07:7228368..7228416 (+ strand)
Length: 49
Type: CDS
Position: Chr07:7228895..7228983 (+ strand)
Length: 89
Type: CDS
Position: Chr07:7229083..7229156 (+ strand)
Length: 74
Type: CDS
Position: Chr07:7229243..7229285 (+ strand)
Length: 43
Type: CDS
Position: Chr07:7229369..7229429 (+ strand)
Length: 61
Type: CDS
Position: Chr07:7229553..7229578 (+ strand)
Length: 26
Type: CDS
Position: Chr07:7229661..7229738 (+ strand)
Length: 78
Type: CDS
Position: Chr07:7230103..7230183 (+ strand)
Length: 81
Type: CDS
Position: Chr07:7230273..7230338 (+ strand)
Length: 66
Type: CDS
Position: Chr07:7230449..7230613 (+ strand)
Length: 165
Type: CDS
Position: Chr07:7230614..7230822 (+ strand)
Length: 209
Type: three_prime_UTR


>Vigan.07G085800.01
ATTTTCTTTT TTAATTTTTA AAAAGTATAG GTAGATCTTT ATTCCCAAAT TAGAAATTGT AACCTCTCAA ACCGCAATTC
TTCCACCACC ACCAACCAGG GCGGCACCGG CGACCCCAAC AGTGGCAAAA CAAACCGCAC ATCACCCAAA TTCCGCCACT
GCCGACGACA AACCCTCCAC GGCCTCAAAT CGCACTTCTC CCACCTTCTT CCCAACATCC ACCACGGCGT CACCGGCGAC
TCCAACAGTG GCAAAATAAA CCTTCACTTT CTTTTGGATT TAGAAATTCT AGATTTCCTT CAAGCGGCTT CTAAATCCCC
TTCCCACGCT TCACTCTAAG TTCCCTTCTC ATTTTCACTC TCAGTTTTGA AATTCCCATC TGATTTCACT TTTTTCTTTT
CCTTTTGTGG TTTATTCCTC TAACGTTTTT GTCCTTTTGT GGTTTATGCC TTTACCGTTT TTGCCCTTTC GTTGTTTCTT
GCTTTACCGT TTTTACCCTT TCACACATAA TCACATTTTG CCACCTCACG GTTGTCAAGA GGAGAGTCAA AATAACATCT
CCCAAAACAA AACAAAATGC ATTGTGAGAG ACTTCGTGGG TTGCCCTGCC TTGCTTCGCT GTCGTTTCGC CGGCCAAAGA
CACAACAATT ATTGCCGTTT CACTGTCTGC TTTGGACATC TCTTTCTTCT CTCCAACAGT TTGATTTGAC AATTCACGAT
GAACGACCTT CTCACTGATT CATTTGTTGG TGAAGCTAGT AATGGCCAGC CTTCTAGAGA AAGTGACATT GAAATGGGAC
AGGTTCCGAG AAGTAACTCT GATATGGGAA TGGAAGCTTT TAATAAGCAG ATCCATGAGG CTGATAAACA GATCGATAAG
TTGGCGGTGC TACTTCAAAA GCTAAAGGAA GCTAATGAGG AATCGAAAGC TGTTACAAAA GCATCTGCCA TGAAAGGCAT
CAAGAAAAGG ATGGAGAAAG ATATTGATGA AGTTGGGAAG ATTGCTCATG GTGTTAAAAC AAAGATTGAG GCTATAAACA
GAGATAACCT ATCTAATAGA CAAAAGCCTG GCTGTGAGAA AGGAACGGGT ATTGACAGAG CAAGAATGAA TATGACAAAT
TCCTTGACTA AAAAATTCAA GGATCTCATG ACAGAGTTCC AGACTCTTAG ACAAAGAATA CAAGATGAAT ATCGTGAGGT
TGTGGAGAGA AGAGTTATAA CAGTTACTGG GACTAGGCCA GATGATGAGA CTATTGATCG CCTGATAGAA ACTGGAAACA
GTGAGCAAAT CTTCCAGAGA GCAATCCTAG AAGCAGGCCG AGGACAGGTA GTGAACACAG TAGAAGAAAT TCAGGAGAGA
CATGATGCTG TGAAAGAGAT TGAGAAAAAA CTTCTTGATT TACACCAGAT TTACCTTGAC ATGGCAGTCT TAGTTGATGC
TCAAGGAGAA ATTCTAGATA ACATTGAAAG TCAGGTCAAC AACGCAGTCG ATCATGTCCA GAGAGGGACA AGTGCACTTC
AAAATGCTAA GAAACTCCAG AAGAACTCAC GAAAATGGAT GTGCATTGCC ATCATTATAC TGTTGATAAT AGTAGCTATC
ATAGTTGTGG GTGTTCTCAA ACCTTGGAAG AGTAGCTAGG GTTCTTGAGT GTGTGGCCCT GTACCTTTTG TCCATAACAT
ATGCATTTGT GTCAAAAGGA CATCTTAGAG CGGGATTTTT ATAAGCCTTC TTATTTTGTA TGATCGAGAT GCTTGTTTTG
TGTGGTGTGA CTGATTTCTC TATACATTCA TTGTCGTGTC TCACGATATA AATTCATATT CTTTGTAGCC CTCAAAGCTT
TATCAGGG

>Vigan.07G085800.01
ATGAACGACC TTCTCACTGA TTCATTTGTT GGTGAAGCTA GTAATGGCCA GCCTTCTAGA GAAAGTGACA TTGAAATGGG
ACAGGTTCCG AGAAGTAACT CTGATATGGG AATGGAAGCT TTTAATAAGC AGATCCATGA GGCTGATAAA CAGATCGATA
AGTTGGCGGT GCTACTTCAA AAGCTAAAGG AAGCTAATGA GGAATCGAAA GCTGTTACAA AAGCATCTGC CATGAAAGGC
ATCAAGAAAA GGATGGAGAA AGATATTGAT GAAGTTGGGA AGATTGCTCA TGGTGTTAAA ACAAAGATTG AGGCTATAAA
CAGAGATAAC CTATCTAATA GACAAAAGCC TGGCTGTGAG AAAGGAACGG GTATTGACAG AGCAAGAATG AATATGACAA
ATTCCTTGAC TAAAAAATTC AAGGATCTCA TGACAGAGTT CCAGACTCTT AGACAAAGAA TACAAGATGA ATATCGTGAG
GTTGTGGAGA GAAGAGTTAT AACAGTTACT GGGACTAGGC CAGATGATGA GACTATTGAT CGCCTGATAG AAACTGGAAA
CAGTGAGCAA ATCTTCCAGA GAGCAATCCT AGAAGCAGGC CGAGGACAGG TAGTGAACAC AGTAGAAGAA ATTCAGGAGA
GACATGATGC TGTGAAAGAG ATTGAGAAAA AACTTCTTGA TTTACACCAG ATTTACCTTG ACATGGCAGT CTTAGTTGAT
GCTCAAGGAG AAATTCTAGA TAACATTGAA AGTCAGGTCA ACAACGCAGT CGATCATGTC CAGAGAGGGA CAAGTGCACT
TCAAAATGCT AAGAAACTCC AGAAGAACTC ACGAAAATGG ATGTGCATTG CCATCATTAT ACTGTTGATA ATAGTAGCTA
TCATAGTTGT GGGTGTTCTC AAACCTTGGA AGAGTAGCTA G

>Vigan.07G085800.01
MNDLLTDSFV GEASNGQPSR ESDIEMGQVP RSNSDMGMEA FNKQIHEADK QIDKLAVLLQ KLKEANEESK AVTKASAMKG
IKKRMEKDID EVGKIAHGVK TKIEAINRDN LSNRQKPGCE KGTGIDRARM NMTNSLTKKF KDLMTEFQTL RQRIQDEYRE
VVERRVITVT GTRPDDETID RLIETGNSEQ IFQRAILEAG RGQVVNTVEE IQERHDAVKE IEKKLLDLHQ IYLDMAVLVD
AQGEILDNIE SQVNNAVDHV QRGTSALQNA KKLQKNSRKW MCIAIIILLI IVAIIVVGVL KPWKSS*