VIGGS:GBrowse

Vigan.07G088900.01

Basic Information:

Name:	Vigan.07G088900.01 Multiple alignment Variant Information
Position:	Chr07:7542040..7544338 (+ strand)
Length:	2299

Functional Information:

Description:	Similar to Xyloglucan endotransglucosylase/hydrolase. [V7BV94, Phaseolus vulgaris]
GO:	Biological Process: carbohydrate metabolic process (GO:0005975)
	Biological Process: cellular glucan metabolic process (GO:0006073)
	Cellular Component: cell wall (GO:0005618)
	Cellular Component: apoplast (GO:0048046)
	Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
	Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro:	Glycoside hydrolase, family 16 (IPR000757)
	Beta-glucanase (IPR008264)
	Concanavalin A-like lectin/glucanases superfamily (IPR008985)
	Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.33,0.18,72.51,46.96,126.81,64.57,50.84,49.52
Arabidopsis thaliana homolog:	AT4G03210.1

Automatic updates:

Name:	BT092779 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-22J23 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:7542040..7542341 (+ strand)
Length:	302
Type:	five_prime_UTR

Position:	Chr07:7542342..7542492 (+ strand)
Length:	151
Type:	CDS

Position:	Chr07:7542635..7542735 (+ strand)
Length:	101
Type:	CDS

Position:	Chr07:7543150..7543343 (+ strand)
Length:	194
Type:	CDS

Position:	Chr07:7543761..7544184 (+ strand)
Length:	424
Type:	CDS

Position:	Chr07:7544185..7544338 (+ strand)
Length:	154
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G088900.01
CTGCCACAGT AACGGCTATA TTTTTTAATC TCGCGTCAAT CTATGTTGTG TAATTTTTGT TCATTCCTTG AAATTTTTGA
AACCCGTGGC ACGTGACATG GCACCGTTAC GTGGAATTAA GGGAAGAATG AGTGAGCTGG GATATAAATA ACACTTAACA
CCCACAGGCC TATCTCGTGA GCGCTCACAG CGAAAGCATT TTGAGTAGAG AACCAGAAGA AGCTTCACTT CAGTCTGTTC
GTTTCTCAGT TGCATAGAAT CTGACCCTTG TTTTGTTATT TTCTTTCGTC TTTACCATAA CAATGTCGAA GATGTTGGGA
CTGTTTGTTG GTCTTTTGTT TCTGGGGTTG GCTGCTTCTG TCAAGTTTGA TGAACTCTTC CAACCCAGTT GGGCCATGGA
CCATTTCATC CATGAAGGAG AACTCCTCAA ACTCAAACTT GATAACTATT CTGGTGCTGG GTTTGGATCC AAGAGCAAGT
ACATGTTTGG GAAAGTGGCC ATCCAACTCA AGCTTGTGGA GGGTGACTCA GCCGGAACCG TTACTGCATT TTATATGTCA
TCAGACGGTC CAACTCACAA CGAATTTGAT TTCGAGTTTC TGGGCAACAC CAGTGGAGAA CCATACTCGG TGCAAACGAA
CGTGTACGTG AACGGTGTTG GTAACAGGGA GCAGAGGCTC AACCTCTGGT TCGACCCCAC CAAGGACTTC CACACCTACT
CCATCTTCTG GAACCAGCGC CAAGTTGTAT TCGAAGTGGA TGGGACGCCA ATAAGGGTGC ATACAAATCT TGAACACAAG
GGAATTCCTT TCCCAAAGGA CCAAGCCATG GGTGTATACA GCTCAATATG GAACGCAGAT GACTGGGCCA CACAGGGTGG
TCGAGTGAAG ACAGATTGGA GCCACGCACC CTTCTTTGCC ACCTACAAGG ACTTCCAAAT CGACGCCTGC GAGTGTTCCG
TGCCAGTCAC ATCGACTGCT TCTGCCAACA AATGTAACAG CAGTGAGGAT AAGAAGTATT GGTGGGACGA ACCCACACTG
TCGGAACTGA ACCTGCACCA GAGCCACCAG CTTATGTGGG TTAGGGCTAA CCATATGGTC TATGACTACT GCACTGACAC
TACTAGGTTT CCGGTCACAC CTGCCGAGTG TGTCCATCAT CGTCACAACT GAAGACAACA AACCCTGTTA ACATGTCCTT
CATGTTTAAC TATGTAATAT ATTTTCCGTA GTCTTATCTT ATGGTAATTC TTTTATTTTG TTGCATGTTT GTGCAATCCA
TTTTTCTTTT ATTAACATCT TATTTTTTAT TAGTTTATTT GGGGTG

[show][hide][copy]CDS

>Vigan.07G088900.01
ATGTCGAAGA TGTTGGGACT GTTTGTTGGT CTTTTGTTTC TGGGGTTGGC TGCTTCTGTC AAGTTTGATG AACTCTTCCA
ACCCAGTTGG GCCATGGACC ATTTCATCCA TGAAGGAGAA CTCCTCAAAC TCAAACTTGA TAACTATTCT GGTGCTGGGT
TTGGATCCAA GAGCAAGTAC ATGTTTGGGA AAGTGGCCAT CCAACTCAAG CTTGTGGAGG GTGACTCAGC CGGAACCGTT
ACTGCATTTT ATATGTCATC AGACGGTCCA ACTCACAACG AATTTGATTT CGAGTTTCTG GGCAACACCA GTGGAGAACC
ATACTCGGTG CAAACGAACG TGTACGTGAA CGGTGTTGGT AACAGGGAGC AGAGGCTCAA CCTCTGGTTC GACCCCACCA
AGGACTTCCA CACCTACTCC ATCTTCTGGA ACCAGCGCCA AGTTGTATTC GAAGTGGATG GGACGCCAAT AAGGGTGCAT
ACAAATCTTG AACACAAGGG AATTCCTTTC CCAAAGGACC AAGCCATGGG TGTATACAGC TCAATATGGA ACGCAGATGA
CTGGGCCACA CAGGGTGGTC GAGTGAAGAC AGATTGGAGC CACGCACCCT TCTTTGCCAC CTACAAGGAC TTCCAAATCG
ACGCCTGCGA GTGTTCCGTG CCAGTCACAT CGACTGCTTC TGCCAACAAA TGTAACAGCA GTGAGGATAA GAAGTATTGG
TGGGACGAAC CCACACTGTC GGAACTGAAC CTGCACCAGA GCCACCAGCT TATGTGGGTT AGGGCTAACC ATATGGTCTA
TGACTACTGC ACTGACACTA CTAGGTTTCC GGTCACACCT GCCGAGTGTG TCCATCATCG TCACAACTGA

[show][hide][copy]PROTEIN

>Vigan.07G088900.01
MSKMLGLFVG LLFLGLAASV KFDELFQPSW AMDHFIHEGE LLKLKLDNYS GAGFGSKSKY MFGKVAIQLK LVEGDSAGTV
TAFYMSSDGP THNEFDFEFL GNTSGEPYSV QTNVYVNGVG NREQRLNLWF DPTKDFHTYS IFWNQRQVVF EVDGTPIRVH
TNLEHKGIPF PKDQAMGVYS SIWNADDWAT QGGRVKTDWS HAPFFATYKD FQIDACECSV PVTSTASANK CNSSEDKKYW
WDEPTLSELN LHQSHQLMWV RANHMVYDYC TDTTRFPVTP AECVHHRHN*