VIGGS:GBrowse

Vigan.07G091300.01

Basic Information:

Name:	Vigan.07G091300.01 Multiple alignment Variant Information
Position:	Chr07:7884902..7888314 (+ strand)
Length:	3413

Functional Information:

Description:	Similar to Cytochrome b6-f complex iron-sulfur subunit. [V7BZ32, Phaseolus vulgaris]
GO:	Biological Process: photosynthesis (GO:0015979)
	Biological Process: oxidation-reduction process (GO:0055114)
	Cellular Component: membrane (GO:0016020)
	Cellular Component: thylakoid membrane (GO:0042651)
	Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121)
	Molecular Function: plastoquinol--plastocyanin reductase activity (GO:0009496)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: oxidoreductase activity, acting on diphenols and related substances as donors (GO:0016679)
	Molecular Function: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (GO:0045158)
	Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537)
InterPro:	Rieske iron-sulphur protein, C-terminal (IPR005805)
	Rieske iron-sulphur protein (IPR014349)
	Cytochrome b6-f complex Fe-S subunit (IPR014909)
	Rieske [2Fe-2S] iron-sulphur domain (IPR017941)
	Cytochrome b6-f complex iron-sulfur subunit (IPR023960)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2.32,7.40,106.28,1212.95,3.34,228.12,15.09,147.63
Arabidopsis thaliana homolog:	AT4G03280.1

Automatic updates:

Name:	NM_001250719 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Rieske iron-sulphur protein precursor (PETC), mRNA.
PubMed ID:	20507538 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:7884902..7885530 (+ strand)
Length:	629
Type:	five_prime_UTR

Position:	Chr07:7885531..7885569 (+ strand)
Length:	39
Type:	CDS

Position:	Chr07:7885676..7885917 (+ strand)
Length:	242
Type:	CDS

Position:	Chr07:7887263..7887380 (+ strand)
Length:	118
Type:	CDS

Position:	Chr07:7887718..7887900 (+ strand)
Length:	183
Type:	CDS

Position:	Chr07:7888083..7888184 (+ strand)
Length:	102
Type:	CDS

Position:	Chr07:7888185..7888314 (+ strand)
Length:	130
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G091300.01
TCTCTGGAAC TGCCGCTATT GGCTGCATGG GTGAAATCAT AAAGCATAAG CGCCTCGTGG ATGACATGGC AGAAGAAAAC
GAGTAGATGT TTGTGAGGAA GATGACTTGT GATGTGTGGA GAGTTGTGTG TATGATGATC ATCATGGAGA GTGACGGTGA
AGAAGGTTAC AGTAGTGGGT GAAGGGTGGA GGTGAAGATG GCTTGTGATG ATTCGGTGTA GTGGCTGCAT GCACACCTTG
TCGTGGAATA AAAAAAACGG GTGCAGGAAG AAATGGCTAG CCCAGGAAGC CTAAACAAAA GAGTAAGCCC ATGTAATGGA
ATAAAAGGGG AAAGGCCTTA CTCCAAACAA GCTTAAATTC TGTAACAAAA TAAAAATCAA AGTTGGCTAT GCTGGACCAA
AACGACCAAT AAACAAGTAG CTGAAACAAA AAAGAAAAAA AAAACAATAT CGTTTGTTGT TGATTGGTTC AAGAACATGT
GGTCGTGTGG CACCTACGTG CCTTAGCGCC TTATCCAGCA ACTGTAGTGT TGACAGTTGT GGTGGTCGTT TAAGAATTTC
TAACCCGAAA TCTTCACTTT ACATCTCTCT ATCTCTCAAT CTTCATCACC AACAAGTGTT TGAGTAACCA TGGCATCCAC
CACTCTATCT CCTACAACCC CTTCTCAGCT ATGCTCCGGA AAGAGTGGGA TTTTCTGTCC CTCACAGGCA CTTCTTGTGA
AACCAATGAA GAGGCAGATG ATGGGGAAGA GCAAGGGAAT GAAAATTGCT TGCCAGGCCA CCAGCATTCC TGCTGATAGA
GTCCCTGACA TGGGCAAAAG GCAGCTCCTG AATCTCCTTC TTCTTGGTGC TATTTCACTC CCAAGTGCTG GAATGCTTAT
TCCCTACACC TATTTCTTCG TTCCTCCAGG TTCAGGTTCT TCAGCTGGAG GTACTGTGGC CAAGGATGCC GTTGGAAATG
ATGTAATCGC AGAGAATTGG CTCAAGACAC ATGGACCTGG TGACAGAACT CTTACACAAG GATTGAAGGG AGATCCTACC
TATCTTGTGG TGGAGAAAGA CAGAACCCTT GCAACATACG CAATTAACGC GGTGTGCACT CATCTCGGAT GTGTGGTGCC
ATGGAATACA GCTGAGAAAA AGTTCATTTG CCCCTGTCAT GGATCTCAGT ACAATGACCA AGGAAGAGTT GTGAGAGGGC
CTGCTCCCTT GTCTCTGGCA TTAGCACATT GTGATATAGA TGATGGGAAG GTGGTGTTTG TTCCTTGGGT TGAAACAGAT
TTCAGAACAG GTGATGCTCC ATGGTGGGCT TAGACTCCTT AAAGCCGTTT CTCTGTTGTC CTATGTATTT AAGTGTGAAA
TTCAAACAAT CTGTTTTGTG TCACTGCATA AATATATTTT GTAATCAAAT TCATATTCTG TGAACTCAAG CTATGGAAAG
GCA

[show][hide][copy]CDS

>Vigan.07G091300.01
ATGGCATCCA CCACTCTATC TCCTACAACC CCTTCTCAGC TATGCTCCGG AAAGAGTGGG ATTTTCTGTC CCTCACAGGC
ACTTCTTGTG AAACCAATGA AGAGGCAGAT GATGGGGAAG AGCAAGGGAA TGAAAATTGC TTGCCAGGCC ACCAGCATTC
CTGCTGATAG AGTCCCTGAC ATGGGCAAAA GGCAGCTCCT GAATCTCCTT CTTCTTGGTG CTATTTCACT CCCAAGTGCT
GGAATGCTTA TTCCCTACAC CTATTTCTTC GTTCCTCCAG GTTCAGGTTC TTCAGCTGGA GGTACTGTGG CCAAGGATGC
CGTTGGAAAT GATGTAATCG CAGAGAATTG GCTCAAGACA CATGGACCTG GTGACAGAAC TCTTACACAA GGATTGAAGG
GAGATCCTAC CTATCTTGTG GTGGAGAAAG ACAGAACCCT TGCAACATAC GCAATTAACG CGGTGTGCAC TCATCTCGGA
TGTGTGGTGC CATGGAATAC AGCTGAGAAA AAGTTCATTT GCCCCTGTCA TGGATCTCAG TACAATGACC AAGGAAGAGT
TGTGAGAGGG CCTGCTCCCT TGTCTCTGGC ATTAGCACAT TGTGATATAG ATGATGGGAA GGTGGTGTTT GTTCCTTGGG
TTGAAACAGA TTTCAGAACA GGTGATGCTC CATGGTGGGC TTAG

[show][hide][copy]PROTEIN

>Vigan.07G091300.01
MASTTLSPTT PSQLCSGKSG IFCPSQALLV KPMKRQMMGK SKGMKIACQA TSIPADRVPD MGKRQLLNLL LLGAISLPSA
GMLIPYTYFF VPPGSGSSAG GTVAKDAVGN DVIAENWLKT HGPGDRTLTQ GLKGDPTYLV VEKDRTLATY AINAVCTHLG
CVVPWNTAEK KFICPCHGSQ YNDQGRVVRG PAPLSLALAH CDIDDGKVVF VPWVETDFRT GDAPWWA*