VIGGS:GBrowse

Vigan.07G094000.01

Basic Information:

Name:	Vigan.07G094000.01 Multiple alignment Variant Information
Position:	Chr07:8083200..8085650 (+ strand)
Length:	2451

Functional Information:

Description:	Similar to Uncharacterized protein. [K7M2R7, Glycine max]
GO:	Biological Process: metabolic process (GO:0008152)
	Molecular Function: folic acid binding (GO:0005542)
	Molecular Function: transferase activity (GO:0016740)
InterPro:	Formiminotransferase, N-terminal subdomain (IPR012886)
	Formiminotransferase, C-terminal subdomain (IPR013802)
	Formiminotransferas, N- and C-terminal subdomains (IPR022384)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.53,2.88,3.13,9.60,3.76,3.55,0.91,4.88
Arabidopsis thaliana homolog:	AT2G20830.2

Automatic updates:

Name:	NM_001255704 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max formimidoyltransferase-cyclodeaminase-like (LOC100819129), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:8083200..8083697 (+ strand)
Length:	498
Type:	five_prime_UTR

Position:	Chr07:8083698..8084079 (+ strand)
Length:	382
Type:	CDS

Position:	Chr07:8084902..8085416 (+ strand)
Length:	515
Type:	CDS

Position:	Chr07:8085417..8085650 (+ strand)
Length:	234
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G094000.01
AAAAAAAATT AGAGTTGCAG AGTGATGAGA TGCTAGAAGG TTAAAATTGG AGGTGCAGGA TTTGGTTCAT AATGCGAGAA
CTGAAAATCG ACGTTCCTTT GTTCGTTTCC CAGACTTTTT GAACTGAAAA CGGGTATTCG AAGGTTTTGT TGTTGCAGTT
GTCGTTGTTT TTTTCCCCTT TCATTGTATC TATCTCATTT GGTTAGTAGA ACACTAAATC TCAATCGAAT GCCATTTGGG
TGTACCATCT TGTAATTCTC TCGGATTTTG GCATTTTCTG TGTTGGAGAT TAACATATAC ACCTGAATTA CCTTCTCTAC
GTGTCTTTAC TCTTCGATGT CGTAACTCAT GTTTTTAAAA AATATCCGAG ATAAGGTTTT GTTTTTGTTG TTGGGATTGT
GGTCGAAAAT GGATTGTGGG AACATGTCTA AAGGTAAGTG ATTTTTGTTG TTTCACTCAC ACCAATTAAG TGGTGATGAA
TGTTGATTGT GAAGAAACAT GTTGAAATCC GTTGTGGGTT GCTGCAAGGT GTACATATCA GAGAGCAGGA ACAGAATTGC
GTTGGAATCA ATAGAACGAG CTTCCACGCT TTTCCCTTTG GCTCCCATAA TCAACAAGTT CGAGGATGTG GCCTACAACA
GAGTTGGCTA CACCCTTGTC TCTGAAATGG GTGTTTCAGG GCCATCTCAC CTGGCAAATG CTGTGTTAGC AATGGTTAAG
GCTGCTTTTG ATACCATTGA TTTTGATGTG CATTCTGGGA CTCATCCTCG ACTTGGTGTT GTGGACCACA TTTGTTTTCA
CCCCTTGCTT GATGCTTCCT TGGATCAAGC AGCTACCACT GCTAGATGTT TAGCCACGGA CATGGGTTCT AATCTTCAAG
TTCCCACCTA TCTATATGGA GCAGCTCATG AGGAGGGGAG GACACTTGAT TCAATCAGAA GAGTATTTGG TTATTTTAAG
CCAAATTCTA GCGAAAATCA ATGGATTGGG GGACTAAAAT CAGACTCTTT ACCACTGAAA CCTGATAGGG GTCCTTCTCA
AGTAACATCA GCAAAAGGTG TTGCTGTCAT TGGAGCCACC AATTGGGTTG ATAACTACAA TATCCCTCTA TTGTCTTCTG
ATATTAATGC TGTTCGGAGA ATTGCCAAAC AGGTCAGTGG AAGAGGTGGT GGACTTCCCT CTGTACAGGC CATGGCACTT
GCACATGGTG AAGGTGTCAT TGAGGTAGCC TGTAATTTGT TGGATCCAAG TAAAGTTGGT GGTGAAAGAG TACAAGAAGA
AGTTGAGAGC CTAGCAAGAG AAGAAGGTAT TTCAGTGGAA AGAGGATACT ACACAGACTT CTCACAGGAT CAAATAATTT
CAAGTTACTT CAAGTTGTTT CAAAACAAAA TATGAGGTCA TTCAGTCTTT GTTTTTTGGC ATATAAAATT ATTCTCACAC
TAGGGAAACT TTCGGCTGAA AAATGTTATG TATAAAGAAA CTAAAAAAAG ATAGGTGAGC CACCTTTTAT CTAGTTGAGT
ACTGGAAATA CTCTTCATAA TATTAGTTTG GTATATTGAA GTTTTCTTTA TTGGGAAATT GTATGAGAAA CAAGGGTTGA
AGGAGAACAC AGTATTGGAT TCCAAGGGA

[show][hide][copy]CDS

>Vigan.07G094000.01
ATGTTGAAAT CCGTTGTGGG TTGCTGCAAG GTGTACATAT CAGAGAGCAG GAACAGAATT GCGTTGGAAT CAATAGAACG
AGCTTCCACG CTTTTCCCTT TGGCTCCCAT AATCAACAAG TTCGAGGATG TGGCCTACAA CAGAGTTGGC TACACCCTTG
TCTCTGAAAT GGGTGTTTCA GGGCCATCTC ACCTGGCAAA TGCTGTGTTA GCAATGGTTA AGGCTGCTTT TGATACCATT
GATTTTGATG TGCATTCTGG GACTCATCCT CGACTTGGTG TTGTGGACCA CATTTGTTTT CACCCCTTGC TTGATGCTTC
CTTGGATCAA GCAGCTACCA CTGCTAGATG TTTAGCCACG GACATGGGTT CTAATCTTCA AGTTCCCACC TATCTATATG
GAGCAGCTCA TGAGGAGGGG AGGACACTTG ATTCAATCAG AAGAGTATTT GGTTATTTTA AGCCAAATTC TAGCGAAAAT
CAATGGATTG GGGGACTAAA ATCAGACTCT TTACCACTGA AACCTGATAG GGGTCCTTCT CAAGTAACAT CAGCAAAAGG
TGTTGCTGTC ATTGGAGCCA CCAATTGGGT TGATAACTAC AATATCCCTC TATTGTCTTC TGATATTAAT GCTGTTCGGA
GAATTGCCAA ACAGGTCAGT GGAAGAGGTG GTGGACTTCC CTCTGTACAG GCCATGGCAC TTGCACATGG TGAAGGTGTC
ATTGAGGTAG CCTGTAATTT GTTGGATCCA AGTAAAGTTG GTGGTGAAAG AGTACAAGAA GAAGTTGAGA GCCTAGCAAG
AGAAGAAGGT ATTTCAGTGG AAAGAGGATA CTACACAGAC TTCTCACAGG ATCAAATAAT TTCAAGTTAC TTCAAGTTGT
TTCAAAACAA AATATGA

[show][hide][copy]PROTEIN

>Vigan.07G094000.01
MLKSVVGCCK VYISESRNRI ALESIERAST LFPLAPIINK FEDVAYNRVG YTLVSEMGVS GPSHLANAVL AMVKAAFDTI
DFDVHSGTHP RLGVVDHICF HPLLDASLDQ AATTARCLAT DMGSNLQVPT YLYGAAHEEG RTLDSIRRVF GYFKPNSSEN
QWIGGLKSDS LPLKPDRGPS QVTSAKGVAV IGATNWVDNY NIPLLSSDIN AVRRIAKQVS GRGGGLPSVQ AMALAHGEGV
IEVACNLLDP SKVGGERVQE EVESLAREEG ISVERGYYTD FSQDQIISSY FKLFQNKI*