GBrowse Details

Vigan.07G096700.01

Basic Information:
Name: Vigan.07G096700.01
Multiple alignment
Variant Information
Position: Chr07:8402552..8405590 (- strand)
Length: 3039
Functional Information:
Description: Similar to Uncharacterized protein. [H9TN50, Glycine max]
GO: Biological Process: sexual reproduction (GO:0019953)
Cellular Component: extracellular region (GO:0005576)
InterPro: Major pollen allergen Lol pI (IPR005795)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,2.54,3.85,0.56,5.67,0.39,6.09
Automatic updates:
Name: NM_001261431 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-B3-like (EXPB8), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:8402552..8402938 (- strand)
Length: 387
Type: three_prime_UTR
Position: Chr07:8402939..8403133 (- strand)
Length: 195
Type: CDS
Position: Chr07:8404020..8404149 (- strand)
Length: 130
Type: CDS
Position: Chr07:8404810..8405110 (- strand)
Length: 301
Type: CDS
Position: Chr07:8405278..8405428 (- strand)
Length: 151
Type: CDS
Position: Chr07:8405429..8405590 (- strand)
Length: 162
Type: five_prime_UTR


>Vigan.07G096700.01
ATACAACCAA AGCAAAAAAA AAAACTCCGC CGCCACCAAT CAATAACTGT CGGCAACACA GCAATCCCAC TTTTCCATTA
ACTGCTTTTT CGTGCTCCGA GCTCGCCGGA GCCGACATTC GCAGCGGCGC GTTACCCCAT TTTCTTATTC TCTCAAAACA
AAATGCAGCG CCACCGTGTC TCCGCCGTGT TTATTCTAAG CCTGTGCTTT AACATTGCGC TAGGACAGAC TCCTACTCAC
AGTGTCCTGG ACCAACATTG GTACCCGGGA ACCGCCACGT GGTACGGCGA ACCCGAGGGC GACGGTAGCA CCGGAGGAGC
ATGTGGGTAT GGTACATTGG TGGACGTGAA GCCGTTGAAG GCAAGGGTGG GTGCAGTGGG GTCAGTGTTG TTCAAGAAAG
GAGAAGGATG CGGGGCTTGT TATAAGGTGA AGTGTTTGGA CCATAGCATA TGTTCCAAGC GGGCAGTGAC GGTTATAGTA
ACAGATGAGT GCCCGGGCTG CCCGTCTGAC CGAACGCACT TCGACCTCAG TGGCTCCGCC TTCGGCCGCA TGGCGTTTGC
CGGTGAAAAC GGTCAGCTCC GCAACCGTGG GGAAATCCCA GTCATTTACC GAAGAACACC ATGCAAGTAT GCTGGGAAAA
ACATCGCCTT CCATGTCAAT GAAGGTTCCA CACCTTTCTG GCTATCACTT CTTGTGGAGT TTGAAGATGG AGATGGTGAC
ATCGGCTCCA TGTATATACA AGAGGGAGGG TCAAGTGAGT GGGTGCAGAT GAGTCATGTT TGGGGTGCAA ATTGGTGCAT
TGTAAGAGGG CCTTTGAGAG GACCTTTTTC TGTTAAAGTA AGCACTTCCA CAGGGAAAAG CCTCACTGCC AAAGATGTTA
TTCCAAGCAA TTGGACTCCC AAAGCAACTT ATACATCACG CTTGAATTTC CTTTCTTAAA CCATTTCCAA GCCTCAGGGA
AGCACTTTTT ACCTTTGCTC AAATTCCACT TGGAAGATAC AGTTCTTGGC CTTAGTGTCT TTATGTTTTT AAATAAGAAA
CAAAAGTAGA AGTTGAGTGC ACAAGGTTAT TCAATGGTGT TTTTGTTTCT TAATTTTACT TCTTTTTTTG CATTTGTATA
CCTGTAACTT TGTCATTTCT GTGGTGTGCA ACTGTTTGTA TTTTGTATTC AAAGTGATGG GGTTGCCCTC TCCAAATTGG
AGGGAGAGCT TGTAGTGGTA GTGTAGTATA TATTTAGTAA AATGTGTGTA TTATTCCAAT GTACTTTAAA TGATGAATGT
ATAAGTTTTA GAACCAGAGA TGATAGATTA CTATATTTTA TTTTCA

>Vigan.07G096700.01
ATGCAGCGCC ACCGTGTCTC CGCCGTGTTT ATTCTAAGCC TGTGCTTTAA CATTGCGCTA GGACAGACTC CTACTCACAG
TGTCCTGGAC CAACATTGGT ACCCGGGAAC CGCCACGTGG TACGGCGAAC CCGAGGGCGA CGGTAGCACC GGAGGAGCAT
GTGGGTATGG TACATTGGTG GACGTGAAGC CGTTGAAGGC AAGGGTGGGT GCAGTGGGGT CAGTGTTGTT CAAGAAAGGA
GAAGGATGCG GGGCTTGTTA TAAGGTGAAG TGTTTGGACC ATAGCATATG TTCCAAGCGG GCAGTGACGG TTATAGTAAC
AGATGAGTGC CCGGGCTGCC CGTCTGACCG AACGCACTTC GACCTCAGTG GCTCCGCCTT CGGCCGCATG GCGTTTGCCG
GTGAAAACGG TCAGCTCCGC AACCGTGGGG AAATCCCAGT CATTTACCGA AGAACACCAT GCAAGTATGC TGGGAAAAAC
ATCGCCTTCC ATGTCAATGA AGGTTCCACA CCTTTCTGGC TATCACTTCT TGTGGAGTTT GAAGATGGAG ATGGTGACAT
CGGCTCCATG TATATACAAG AGGGAGGGTC AAGTGAGTGG GTGCAGATGA GTCATGTTTG GGGTGCAAAT TGGTGCATTG
TAAGAGGGCC TTTGAGAGGA CCTTTTTCTG TTAAAGTAAG CACTTCCACA GGGAAAAGCC TCACTGCCAA AGATGTTATT
CCAAGCAATT GGACTCCCAA AGCAACTTAT ACATCACGCT TGAATTTCCT TTCTTAA

>Vigan.07G096700.01
MQRHRVSAVF ILSLCFNIAL GQTPTHSVLD QHWYPGTATW YGEPEGDGST GGACGYGTLV DVKPLKARVG AVGSVLFKKG
EGCGACYKVK CLDHSICSKR AVTVIVTDEC PGCPSDRTHF DLSGSAFGRM AFAGENGQLR NRGEIPVIYR RTPCKYAGKN
IAFHVNEGST PFWLSLLVEF EDGDGDIGSM YIQEGGSSEW VQMSHVWGAN WCIVRGPLRG PFSVKVSTST GKSLTAKDVI
PSNWTPKATY TSRLNFLS*