GBrowse Details

Vigan.07G097200.01

Basic Information:
Name: Vigan.07G097200.01
Multiple alignment
Variant Information
Position: Chr07:8453000..8456819 (+ strand)
Length: 3820
Functional Information:
Description: Similar to DTW domain-containing protein isoform 1. [XP_007043587.1, Theobroma cacao]
InterPro: DTW (IPR005636)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.92,13.81,5.92,10.28,4.69,3.40,3.08,2.63
Arabidopsis thaliana homolog: AT1G03687.1
Structure :
Position: Chr07:8453000..8453014 (+ strand)
Length: 15
Type: five_prime_UTR
Position: Chr07:8453015..8453350 (+ strand)
Length: 336
Type: CDS
Position: Chr07:8453424..8453564 (+ strand)
Length: 141
Type: CDS
Position: Chr07:8453912..8454004 (+ strand)
Length: 93
Type: CDS
Position: Chr07:8454098..8454224 (+ strand)
Length: 127
Type: CDS
Position: Chr07:8454618..8454727 (+ strand)
Length: 110
Type: CDS
Position: Chr07:8455300..8455380 (+ strand)
Length: 81
Type: CDS
Position: Chr07:8456112..8456194 (+ strand)
Length: 83
Type: CDS
Position: Chr07:8456278..8456494 (+ strand)
Length: 217
Type: CDS
Position: Chr07:8456495..8456819 (+ strand)
Length: 325
Type: three_prime_UTR


>Vigan.07G097200.01
CTTGGGATAG TGCAGATGAA ACAATTCCTA CACATGAAGT TGGTGTCAAC GCTTCTTCCG ACAAAGCCCC TCTTCCTATG
CAATTGTTCT GTTCCATTCC CCTTGTGGTT CTGGAACAAA ACTCGCTTCC TACTCACACG CCATTACAGT CACCTTCGTC
GTCCTTCATC ACTCTCTTAC ACAAATATGG CCCAAGAAGA AGGGGTGGTG GTGTCTTTGC AGGAATGGCA GGGTTGGGGC
ACCACCTCCC CACTCCCCAC CATGGTGGCA CAAATTGTCC ACGATTTGAA GGGGCTTGAA CATGACTTGG ATGCCCACAT
GAGTTTTGGC GGCAATGGCG GAAAGTTAAA GGGGAATTTT AGAATACAAG AAGATAAGAA ACACCGTGCC ACGTATCAGG
CTTTGGCTGA TTCGGAGAAG AAGCTTCAAT TTTATTCGGC CAGGCAGATA GCTTGTCGCA TTCTCGGTAG CAGGGGTTAC
CTTTGTCAGA AGTGCTGGCT TCCCATGGAG GATTGTATGT GTTCAGAAGT CACATCCTGC TCGCTCCACC CGGGAATAAG
ATTTTGGCTG TATATGCATC CCAAGGATTT CTTGAGACAG AACAACACTG GAAAGATTTT GTGGCAGGTG TTTGGGGTTG
ATGCAGCATC TTTGTGCCTT TTTGGCATTC CTGAACACGA GGAAATCATG TGGAATTCCT TAAAAGTGGC AGGAAAAAGT
AAGGTGTGGT GCCTTTATCC CAACAAGAGT GCAGTTCTAA AGTCAGTTCA AAATGCGTTT GATCAGGAAC CAGTTACAAG
TGATGGAATT GCACCTTCAG AGTTGAAAGT AGAAACAATC CATCATTTTA TTTTGATTGA TGGGACGTGG AGCAATTCAG
CAGCAATGTT TAGGCGCCTT CAGGATAAAG CAAAGTTAGT TTGGGGGGAT GAGGATCTTC CATGTATATC CCTAAATCCT
GGTGCTTCTG CTATGCATAA ACTTAGACCA CAGCCATCTT GGGATCGTAC ATGCACAGCG GCAGCTGCAG CTGGCTTGCT
CTCAGAGCTC CAACTTCTTC CACAGTTTAG GTCCATTGAA TTGGACGAAC AGGCAGAAGC AATAGAGCAT GCTTTATCAG
TCTTATTAGA TGCCCTCACA AAGAGACGGG TTCGCATGGG AAGGTCCATA ACAAGAAAAA TGAGGCAAAC CAACATCCGA
TAGAGACATC CAAGATTGTT CTGACAACGT ACACAGTAAG CCTGTTGCAA TTTTTGGAAA TGAGAAAACT CTAAACCCTG
TACATGTAGG CTCAATGGGA AATTTTGGCT TTTAGTTATG TAGTCAAGAA TTTCCAACTT CTTCACATTA ACGTCTGAGA
AAGGTTTCAA GTCTTAAATT TCTCACTGAA GTGATTCCAT TTAAAACATT TGGATGGAAG TGTACCTTTT TTGGGTGACA
AGATAGAAAT TTAGTTGTCC ATGGTTTGAA TCTATATTTG CCGTAAGACT GTAGGGGAAT AGATCATAAC GTGTTATCTT
TCACCCAA

>Vigan.07G097200.01
ATGAAACAAT TCCTACACAT GAAGTTGGTG TCAACGCTTC TTCCGACAAA GCCCCTCTTC CTATGCAATT GTTCTGTTCC
ATTCCCCTTG TGGTTCTGGA ACAAAACTCG CTTCCTACTC ACACGCCATT ACAGTCACCT TCGTCGTCCT TCATCACTCT
CTTACACAAA TATGGCCCAA GAAGAAGGGG TGGTGGTGTC TTTGCAGGAA TGGCAGGGTT GGGGCACCAC CTCCCCACTC
CCCACCATGG TGGCACAAAT TGTCCACGAT TTGAAGGGGC TTGAACATGA CTTGGATGCC CACATGAGTT TTGGCGGCAA
TGGCGGAAAG TTAAAGGGGA ATTTTAGAAT ACAAGAAGAT AAGAAACACC GTGCCACGTA TCAGGCTTTG GCTGATTCGG
AGAAGAAGCT TCAATTTTAT TCGGCCAGGC AGATAGCTTG TCGCATTCTC GGTAGCAGGG GTTACCTTTG TCAGAAGTGC
TGGCTTCCCA TGGAGGATTG TATGTGTTCA GAAGTCACAT CCTGCTCGCT CCACCCGGGA ATAAGATTTT GGCTGTATAT
GCATCCCAAG GATTTCTTGA GACAGAACAA CACTGGAAAG ATTTTGTGGC AGGTGTTTGG GGTTGATGCA GCATCTTTGT
GCCTTTTTGG CATTCCTGAA CACGAGGAAA TCATGTGGAA TTCCTTAAAA GTGGCAGGAA AAAGTAAGGT GTGGTGCCTT
TATCCCAACA AGAGTGCAGT TCTAAAGTCA GTTCAAAATG CGTTTGATCA GGAACCAGTT ACAAGTGATG GAATTGCACC
TTCAGAGTTG AAAGTAGAAA CAATCCATCA TTTTATTTTG ATTGATGGGA CGTGGAGCAA TTCAGCAGCA ATGTTTAGGC
GCCTTCAGGA TAAAGCAAAG TTAGTTTGGG GGGATGAGGA TCTTCCATGT ATATCCCTAA ATCCTGGTGC TTCTGCTATG
CATAAACTTA GACCACAGCC ATCTTGGGAT CGTACATGCA CAGCGGCAGC TGCAGCTGGC TTGCTCTCAG AGCTCCAACT
TCTTCCACAG TTTAGGTCCA TTGAATTGGA CGAACAGGCA GAAGCAATAG AGCATGCTTT ATCAGTCTTA TTAGATGCCC
TCACAAAGAG ACGGGTTCGC ATGGGAAGGT CCATAACAAG AAAAATGAGG CAAACCAACA TCCGATAG

>Vigan.07G097200.01
MKQFLHMKLV STLLPTKPLF LCNCSVPFPL WFWNKTRFLL TRHYSHLRRP SSLSYTNMAQ EEGVVVSLQE WQGWGTTSPL
PTMVAQIVHD LKGLEHDLDA HMSFGGNGGK LKGNFRIQED KKHRATYQAL ADSEKKLQFY SARQIACRIL GSRGYLCQKC
WLPMEDCMCS EVTSCSLHPG IRFWLYMHPK DFLRQNNTGK ILWQVFGVDA ASLCLFGIPE HEEIMWNSLK VAGKSKVWCL
YPNKSAVLKS VQNAFDQEPV TSDGIAPSEL KVETIHHFIL IDGTWSNSAA MFRRLQDKAK LVWGDEDLPC ISLNPGASAM
HKLRPQPSWD RTCTAAAAAG LLSELQLLPQ FRSIELDEQA EAIEHALSVL LDALTKRRVR MGRSITRKMR QTNIR*