VIGGS:GBrowse

Vigan.07G102100.01

Basic Information:

Name:	Vigan.07G102100.01 Multiple alignment Variant Information
Position:	Chr07:9045238..9047342 (- strand)
Length:	2105

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M3P0, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.11,1.68,0.36,7.32,10.23,13.91,12.73

Automatic updates:

Name:	NM_001250775 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305599 (LOC100305599), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:9045238..9045466 (- strand)
Length:	229
Type:	three_prime_UTR

Position:	Chr07:9045467..9045905 (- strand)
Length:	439
Type:	CDS

Position:	Chr07:9046903..9047114 (- strand)
Length:	212
Type:	CDS

Position:	Chr07:9047115..9047342 (- strand)
Length:	228
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.07G102100.01 class=Sequence position=Chr07:9045238..9047342 (- strand)
AACGTAGGAA AGTAGGAGAA GAGTCATTTT GAATACTTCT CCCTCCAACA GCCAAAGCCT GCCTTCCTCG TACACGCTAC
ACATACACCT CTCTCTCTCT CTCTCCATCC GTGTCTGCTA TAACCACAAT GCTCAGCAAT TTACAACATA TAATAAACTC
ACCCGTTTAC TCCCTGAAAT CAATTTCCTT TCTTTCACCC TCCATTGCTT TTCCTTCACC CAAACTCAAT GGGTGCCGAC
GAAGACTATG ACTACTTGTT CAAGCTCGTC CTCATCGGTG ATTCTGCCGT TGGAAAGTCC AACCTCTTAT CTCGATTCAC
GCGAAACGAG TTCAGCTTGG AGACCAAATC CACCATCGGC GTCGAATTCG CCACCCGCAG CGTCCCCGTC GATAGCAAAC
TCGTCAAGGC TCAAATCTGG GACACCGCCG GCCAAGAAAG GTCTCACCTT TTGCGCTTTC TCGATATGCA TGTCATTCTT
GCTTTAATTT AATCTTGATG GGTTGTCTTA GTTTTGCATT TGAATAGTTG GATCTTTGTG GGGTTCTTGG TTTTGATCGT
GTGATCAGGA CACTGATCGA AGAACTGAGG CCTGATTTGA CTGTGTTCTG TAATATATGG TTGCTGTTGG TTAGGGAAGG
TTTTCAAGAC ATGAAAAAGT TATAGTTTGT TCAATTTGTC AGGGTTTCTT TGTCTGACAG GATCTGTTGT TCTATCTACG
AAACATGCAT AGATTTGGAT TGGGATCACG TGTCTCTTTC TTTATCTTTT CAATTGAAAA ATAACACCTT TTTCTCCAGA
ATTGCTGGAT ATTTATTTAC ATAACGCGAA GCATATCGAG AGTGGACAAC TCACATTCCT AATGTGTATT ACAATGCTGA
TTTATCTTGA TGAAATATTA GTGATCCGAT CTTGATCCAA CAATTCTAAA ATTGCCAGAT GTGTGAATGC GTGCAAAATT
CTCTGCAAAA ATCCAGAATG ACAATATTTT CTCATTGAAA AGGAGCCAAG TGATTTGATT TCCACGTGTT GTTAATCTTT
GTTGAAATGA AGAGATGCAG AGTCCTCTGT CATTGACCAG TTAAATGCAG AGTCCTCTAT TATTTTAGGA GCACGAAGTT
CTAATTTAAT CAAATACATA ATTAAGTGAT TCTTAGCAGA TTACTTAAAT TTACTACTGG TATAAGAAGT GCGATTTAAC
AACATTCTTT AGTATATTTT CATCTGCCAA ATACTGCAAT TGAATTTGGT CAACACATTG TACAAAAGTC TTAGACTGAT
AACTTGCAAT GTTTTTATTT TCAAATCTAC CACGTTGTAC TTGCTAATCT AAACTCCATA AATCTGTATA TATGACTATT
CCTGAACCTT ACATTTCCTA TGATTTGTGA CTGGTAAATG AAAACTAAAA GTCCTTTTTC TGTTTTCCTT ACCACAGATA
TCGTGCTATT ACAAGTGCAT ATTACCGAGG AGCAGTTGGT GCTTTGGTTG TGTACGATGT AACTCGACAC GTGACGTTTG
AGAACGTTGA GAGATGGTTG AAGGAGCTTA GGGATCACAC AGAAGCATAT GTTGTGGTGA TGCTGGTGGG AAACAAGGCA
GATCTTCGAC ATTTGCGTGC AGTGTCAACT GATGAAGCCA AAGAATATGC AGAAAAAGAG AAGATATTCT TCATGGAAAC
CTCTGCCCTT GAGTCCTTGA ATGTGGACAG TGCTTTTACA GAAGTGCTGA CTCAGATATA CAATGTTGTG AGTAGGAAAA
CACTTGAGAC AGTGGATGAA TCTCATGCAA CATCCTTGCC CAAAGGGGAA ACCATTGTTC TTGGAACCAA AGAGGATGTT
TCAGCTGTTA AAAAGAGTGG ATGCTGTTCC ACATAGTTTG TTTGAGATAC AAAAGGTGTT GATTATGCAC TATAACAGGA
TGTTCTGTCT ACCCATTGTT TTATTTTCTT CAATTTTTGG TTGCTCGCGT ATACTATTCA CATCAACAGC CCTTCATTTT
GATCATAATA CAGGTTTTCT ATATTCAAAT ATCTTCCTTC TTCTGTCTTA TTTATCTGGA CATGGTGATC GATAAAGAAA
ACAGAGTTAC ATGATCAAAA AATAA

[show][hide][copy]TRANSCRIPT

>Vigan.07G102100.01
AACGTAGGAA AGTAGGAGAA GAGTCATTTT GAATACTTCT CCCTCCAACA GCCAAAGCCT GCCTTCCTCG TACACGCTAC
ACATACACCT CTCTCTCTCT CTCTCCATCC GTGTCTGCTA TAACCACAAT GCTCAGCAAT TTACAACATA TAATAAACTC
ACCCGTTTAC TCCCTGAAAT CAATTTCCTT TCTTTCACCC TCCATTGCTT TTCCTTCACC CAAACTCAAT GGGTGCCGAC
GAAGACTATG ACTACTTGTT CAAGCTCGTC CTCATCGGTG ATTCTGCCGT TGGAAAGTCC AACCTCTTAT CTCGATTCAC
GCGAAACGAG TTCAGCTTGG AGACCAAATC CACCATCGGC GTCGAATTCG CCACCCGCAG CGTCCCCGTC GATAGCAAAC
TCGTCAAGGC TCAAATCTGG GACACCGCCG GCCAAGAAAG ATATCGTGCT ATTACAAGTG CATATTACCG AGGAGCAGTT
GGTGCTTTGG TTGTGTACGA TGTAACTCGA CACGTGACGT TTGAGAACGT TGAGAGATGG TTGAAGGAGC TTAGGGATCA
CACAGAAGCA TATGTTGTGG TGATGCTGGT GGGAAACAAG GCAGATCTTC GACATTTGCG TGCAGTGTCA ACTGATGAAG
CCAAAGAATA TGCAGAAAAA GAGAAGATAT TCTTCATGGA AACCTCTGCC CTTGAGTCCT TGAATGTGGA CAGTGCTTTT
ACAGAAGTGC TGACTCAGAT ATACAATGTT GTGAGTAGGA AAACACTTGA GACAGTGGAT GAATCTCATG CAACATCCTT
GCCCAAAGGG GAAACCATTG TTCTTGGAAC CAAAGAGGAT GTTTCAGCTG TTAAAAAGAG TGGATGCTGT TCCACATAGT
TTGTTTGAGA TACAAAAGGT GTTGATTATG CACTATAACA GGATGTTCTG TCTACCCATT GTTTTATTTT CTTCAATTTT
TGGTTGCTCG CGTATACTAT TCACATCAAC AGCCCTTCAT TTTGATCATA ATACAGGTTT TCTATATTCA AATATCTTCC
TTCTTCTGTC TTATTTATCT GGACATGGTG ATCGATAAAG AAAACAGAGT TACATGATCA AAAAATAA

[show][hide][copy]CDS

>Vigan.07G102100.01
ATGGGTGCCG ACGAAGACTA TGACTACTTG TTCAAGCTCG TCCTCATCGG TGATTCTGCC GTTGGAAAGT CCAACCTCTT
ATCTCGATTC ACGCGAAACG AGTTCAGCTT GGAGACCAAA TCCACCATCG GCGTCGAATT CGCCACCCGC AGCGTCCCCG
TCGATAGCAA ACTCGTCAAG GCTCAAATCT GGGACACCGC CGGCCAAGAA AGATATCGTG CTATTACAAG TGCATATTAC
CGAGGAGCAG TTGGTGCTTT GGTTGTGTAC GATGTAACTC GACACGTGAC GTTTGAGAAC GTTGAGAGAT GGTTGAAGGA
GCTTAGGGAT CACACAGAAG CATATGTTGT GGTGATGCTG GTGGGAAACA AGGCAGATCT TCGACATTTG CGTGCAGTGT
CAACTGATGA AGCCAAAGAA TATGCAGAAA AAGAGAAGAT ATTCTTCATG GAAACCTCTG CCCTTGAGTC CTTGAATGTG
GACAGTGCTT TTACAGAAGT GCTGACTCAG ATATACAATG TTGTGAGTAG GAAAACACTT GAGACAGTGG ATGAATCTCA
TGCAACATCC TTGCCCAAAG GGGAAACCAT TGTTCTTGGA ACCAAAGAGG ATGTTTCAGC TGTTAAAAAG AGTGGATGCT
GTTCCACATA G

[show][hide][copy]PROTEIN

>Vigan.07G102100.01
MGADEDYDYL FKLVLIGDSA VGKSNLLSRF TRNEFSLETK STIGVEFATR SVPVDSKLVK AQIWDTAGQE RYRAITSAYY
RGAVGALVVY DVTRHVTFEN VERWLKELRD HTEAYVVVML VGNKADLRHL RAVSTDEAKE YAEKEKIFFM ETSALESLNV
DSAFTEVLTQ IYNVVSRKTL ETVDESHATS LPKGETIVLG TKEDVSAVKK SGCCST*