GBrowse Details

Vigan.07G102400.01

Basic Information:
Name: Vigan.07G102400.01
Multiple alignment
Variant Information
Position: Chr07:9078231..9082111 (+ strand)
Length: 3881
Functional Information:
Description: Similar to Uncharacterized protein. [C6TGZ0, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Basic-leucine zipper domain (IPR004827)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.41,7.89,5.58,0.28,0.27,5.02,5.14
Automatic updates:
Name: NM_001254639 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor bZIP58 (BZIP58), mRNA.
PubMed ID: 18365246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:9078231..9078691 (+ strand)
Length: 461
Type: five_prime_UTR
Position: Chr07:9078692..9079290 (+ strand)
Length: 599
Type: CDS
Position: Chr07:9079856..9079946 (+ strand)
Length: 91
Type: CDS
Position: Chr07:9080287..9080413 (+ strand)
Length: 127
Type: CDS
Position: Chr07:9081141..9081292 (+ strand)
Length: 152
Type: CDS
Position: Chr07:9081293..9082111 (+ strand)
Length: 819
Type: three_prime_UTR


>Vigan.07G102400.01
CCAACCCCTC CTCCCAGCTG TTCATAGCTG TCCAATCCCT TCCCATCCCC ATGTGACCCC ACTGCACAAA CACATACATA
CAGATACCCC AGAGATTTTT TTCCGATTTT TAAACCCCAG AACAAAATAT AACTATTCTA AATTATACCT TTTTTTTTTT
AATTTTCAAA ACTTAAGAAA GTTCATGATT GTGTTGTTTT TTGTTCGTGT GCCTTTCTTA CCTCTAACAA CATTCCCCTG
TGCTTGCTGG GAACGTGCAT ATATATTTAT AAAAGAGATG TGTTAAAGCC TTGTTTCATT TCTTCTCTCT CTTCTTCTGC
TGCATGTCAT ATGCAATATA CAGATACAAT AATGTGCATA TTTTTCATAG GGACATGTAC AACTGCAACA ACATTAACAT
CCGAGGTTAA TCTGTGGTAA CACTTTCTTT CTGGTTTGGT GTGTGTGTGT GTGTGTTTCA AATGGCGCAA TTGCCTCCAA
AGATCCCAAA CCTGTCACCA GGTTGGCCGG ACTTCTCTTC TCAACACCAG AAGATGCCAT TGCCACCTCT TATCAACGAC
ACCACCACCA CCACCCATCA AAATCAAAAC CCTTCTTGGG TGGACGAGTT CCTCGACTTC TCCTCCGCCC GCCGCGGCGC
TCACAGGCGG TCGGTGAGCG ACTCCATCAC CTACTTGGAC GCACCGATGA GGTGTGGTGA GAACAACAAC CATAACAATA
GTAATGGCAA TGGCAATGAG TTTGACAGGT TTGATGATGA ACAATTCATG TCCATGTTCA CGGATGAAGT AGTGCTCTCT
GGGGTCCCCT TGCCACCACC GACTACCTTG TCCTCCTCTA ACCCTTCTAG CCCTTCCGAT CAGAACTTCT TCCATGATGA
GAAAGAGAGC AGCCGGAAGG AGAGGAAGCT GCAGAAGGAG GAAGAGGAGC ACCACCACCA ACTGAAAAAT GAAGCAGCTG
AGGTTGAAAG CCAATGCATG CAGGAAATTG CGCAGCCTCC AAATGACACC AATACTTCTT CTTCCAATGA GAGAATTAGT
GACCCCAAGA GAGTCAAAAG AATCTTGGCT AATAGACAAT CTGCACAAAG ATCGCGAGTG AGGAAGCTGC AATACATATC
AGAGCTTGAG AGAAGTGCAA CTTCATTACA GGCTGAAGTT TCAGTGCTGT CTCCAAGGGT TGCATTTTTG GATCACCAAC
GTTTGCTTCT AAATGTGGAC AATAGTGCTC TCAAGCAAAG GATCGCTGCC CTTGCTCAAG ACAAGATCTT TAAAGATGCT
CATCAAGAGG CACTGAAGAG GGAGATAGAA AGACTGAGGC AAGTTTATCA GCAGCAGAGG CTGAAGAAGA TGGAAAATGC
AGCAGAATCA GGTCCATTAC CATTATGTGA TGTTCAAAGA GAAAAGGAAG TACAACTTCT GAACGTTTGA AGAAGATTTA
TGAGATGAGA GTGTGGTTGT TTACATAAAG AGAGAGATGC ATGGGAGAAA GGAAAGGTTA AATTTTTGTT GTGCATTGAG
TATTTTGATT AGAGAATTGA TGAAGTTTGA GTGAGTGAGT GAGTGAATGA GTGGTGGTAG GCTTCTGGTG TGAAACAGCG
CAGGCACGTG ATGTGTTTAC TTTAAAAGGA GGGGACCACT GAAAGCTTGC ATGATTAGAA TGCAGGGGAT CCACATGTGC
AGCAGTGGCA TCAAAAGAGA GGGTGGAAGA AACAGTTGTG TCTGTCTGCT TTAACTTGAT AGATAGGAGT GTGGTATATC
TTCATCATTC CTTTCACTTC TTTATTTCTT CTCTATCATT CTTTTCTATT TTCCTTCTTC TTTTTCGATG CATCTTCCAA
AACAAACACA ACTGCCCATG GATCATGCAT CAAATTAATC AACCTGTATA TCTCTGTCAT GGCTTTTCTG CTTTGCCTCT
CTACTTTCTG TTATCTTATC TTTTTTATTA TTTCACTTAA TTATTTTCTG AACCCAAAAT GTAAATACTC ACTTCACACA
ATCTTCCATG TATATATATA ATAGTAGTTT TTCTGCTTTC ACTGTTTCAC AACTTTCTGT GTTATGAAAT TGAATTACGT
CACACCTATG CCAAAATGGT AAAAGATTGT GAGTGAAATT GCATTGGAGA AAGTGCATGT ATGTTATCTC AATCTCATCT
CACAATGTTT TTTTATCCAT TTCTTATTCT CTTTTTCTAT ATTTGCAAAG CTATACCTTT TTTCCTTTTC TTTTGTACTT
TGTTTGTCA

>Vigan.07G102400.01
ATGGCGCAAT TGCCTCCAAA GATCCCAAAC CTGTCACCAG GTTGGCCGGA CTTCTCTTCT CAACACCAGA AGATGCCATT
GCCACCTCTT ATCAACGACA CCACCACCAC CACCCATCAA AATCAAAACC CTTCTTGGGT GGACGAGTTC CTCGACTTCT
CCTCCGCCCG CCGCGGCGCT CACAGGCGGT CGGTGAGCGA CTCCATCACC TACTTGGACG CACCGATGAG GTGTGGTGAG
AACAACAACC ATAACAATAG TAATGGCAAT GGCAATGAGT TTGACAGGTT TGATGATGAA CAATTCATGT CCATGTTCAC
GGATGAAGTA GTGCTCTCTG GGGTCCCCTT GCCACCACCG ACTACCTTGT CCTCCTCTAA CCCTTCTAGC CCTTCCGATC
AGAACTTCTT CCATGATGAG AAAGAGAGCA GCCGGAAGGA GAGGAAGCTG CAGAAGGAGG AAGAGGAGCA CCACCACCAA
CTGAAAAATG AAGCAGCTGA GGTTGAAAGC CAATGCATGC AGGAAATTGC GCAGCCTCCA AATGACACCA ATACTTCTTC
TTCCAATGAG AGAATTAGTG ACCCCAAGAG AGTCAAAAGA ATCTTGGCTA ATAGACAATC TGCACAAAGA TCGCGAGTGA
GGAAGCTGCA ATACATATCA GAGCTTGAGA GAAGTGCAAC TTCATTACAG GCTGAAGTTT CAGTGCTGTC TCCAAGGGTT
GCATTTTTGG ATCACCAACG TTTGCTTCTA AATGTGGACA ATAGTGCTCT CAAGCAAAGG ATCGCTGCCC TTGCTCAAGA
CAAGATCTTT AAAGATGCTC ATCAAGAGGC ACTGAAGAGG GAGATAGAAA GACTGAGGCA AGTTTATCAG CAGCAGAGGC
TGAAGAAGAT GGAAAATGCA GCAGAATCAG GTCCATTACC ATTATGTGAT GTTCAAAGAG AAAAGGAAGT ACAACTTCTG
AACGTTTGA

>Vigan.07G102400.01
MAQLPPKIPN LSPGWPDFSS QHQKMPLPPL INDTTTTTHQ NQNPSWVDEF LDFSSARRGA HRRSVSDSIT YLDAPMRCGE
NNNHNNSNGN GNEFDRFDDE QFMSMFTDEV VLSGVPLPPP TTLSSSNPSS PSDQNFFHDE KESSRKERKL QKEEEEHHHQ
LKNEAAEVES QCMQEIAQPP NDTNTSSSNE RISDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSATSLQ AEVSVLSPRV
AFLDHQRLLL NVDNSALKQR IAALAQDKIF KDAHQEALKR EIERLRQVYQ QQRLKKMENA AESGPLPLCD VQREKEVQLL
NV*