VIGGS:GBrowse

Vigan.07G107200.01

Basic Information:

Name:	Vigan.07G107200.01 Multiple alignment Variant Information
Position:	Chr07:9701004..9705536 (+ strand)
Length:	4533

Functional Information:

Description:	Similar to uncharacterized protein. [C6TDJ6, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.84,5.94,4.04,2.88,10.92,12.57,2.84,3.58
Arabidopsis thaliana homolog:	AT3G58690.1

Automatic updates:

Name:	NM_001253153 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max serine/threonine-protein kinase PBS1-like (LOC100809555), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255059 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max serine/threonine-protein kinase (LOC100804893), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:9701004..9701228 (+ strand)
Length:	225
Type:	five_prime_UTR

Position:	Chr07:9701229..9701385 (+ strand)
Length:	157
Type:	CDS

Position:	Chr07:9702530..9702774 (+ strand)
Length:	245
Type:	CDS

Position:	Chr07:9703003..9703138 (+ strand)
Length:	136
Type:	CDS

Position:	Chr07:9704439..9704697 (+ strand)
Length:	259
Type:	CDS

Position:	Chr07:9704820..9704952 (+ strand)
Length:	133
Type:	CDS

Position:	Chr07:9705075..9705338 (+ strand)
Length:	264
Type:	CDS

Position:	Chr07:9705339..9705536 (+ strand)
Length:	198
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G107200.01
GCAAATTGCA AGAAGTTGAG GGACGAAGAT GCAAAAGAGA AATGTCAGTA TCAGCACTGT AGGCGGCAGA GTAAAAAGGG
CAGAGGGAGG GAGAGTGAGC CAAGTCAGAG TGTGTCTTGC AAGAAGCTCC GACGCAGCCT TTTAACCATT TTCGCTTCTT
CTCGCATTGC CACTATGCTT TAACCATTTC TAGGGTTAGG GTTTTTGCAT CTCAGAGAAA TCTAAATGGA CGAAGATTAT
GACTACAGAA GGAAGGCCAA GATTGCTCTC ATCGCCATTT TGGTCTTCGC TTCCCTCGCC GTCTTTGCCT TGTTCGTTGC
CTTTACTTAC TACTGCTACA TCCTCAACAA GGTCTCCAAC CGCCGCAAAA GCCTCAAAAA AGTTGAAGAC GCAAACCTTA
ATGAGAATAG TGACTTTGCA AATCTGCAAG TTATTGCCGA GAAAGGACTT CAGGTGTTCA CTTTCAAGCA GCTGCATTCT
GCAACAGGGG GCTTCAGCAA GTCGAATGTC ATTGGTCATG GTGGATTTGG ACTTGTTTAC CGGGGAGTGC TCAATAATGG
CAGGAAAGTT GCCATTAAAT TCATGGATCA GGCAGGAAAG CAGGGGGAAG AAGAATTTAA AGTAGAGGTG GAATTGCTAA
GCCGGTTGCA TTCACCATAT CTACTGGCAT TGCTTGGGTA CTGCTCTGAT AGTAATCATA AATTGCTGGT GTATGAATTT
ATGGCTAATG GTGGACTGCA GGAACATCTT TATCCTGTTA ACAATTCTAT TATTACACCC ATAAAGTTGG ATTGGGAAAC
TCGATTAAGA ATAGCACTTG AAGCTGCTAG GGGGTTAGAA TATCTTCATG AGCATGTCAG TCCCCCAGTT ATTCACAGAG
ATTTTAAGAG CAGTAACATC CTCTTGGATA AGAAATTTCA TGCCAAAGTT TCTGATTTTG GATTGGCAAA GCTGGGACCT
GATAGAGCTG GTGGACATGT TTCAACTCGA GTTTTGGGCA CCCAAGGATA TGTTGCTCCC GAATATGCAC TAACAGGGCA
TTTAACCACA AAATCAGATG TGTACAGTTA TGGTGTTGTA CTTTTGGAGC TGCTCACTGG CCGAGTGCCA GTAGATATGA
AGAGACCTCC CGGAGAAGGT GTTCTTGTTT CTTGGGCTCT GCCTCTTTTG ACCGATAGGG AAAAGGTTGT AAAGATTATG
GATCCTTCAT TGGAGGGACA GTACTCTATG AAAGAGGTTG TCCAGGTGGC TGCAATTGCT GCAATGTGTG TGCAACCCGA
GGCAGACTAT CGTCCTCTCA TGGCAGATGT TGTGCAGTCA TTGGTTCCAC TGGTTAAGAC TCAAAGGTCC CCTTCAAAGG
TGGGAAGCTG CTCTAGTTTC CACTCTCCCA AGTTGTCCCC CGGCCCAACA TCTACTTAGT GCATGTAACA TATATTATCA
ACATTTAAAT GATGGATAGG TACATGCTCA CCTAACTTGT ATCTGTATGC TTGGTATTAG TTGCCGTTTC TTTGTAATCT
TGAACAATGC GATACATTTT GGTGAGGAAA AAAATGGTGG GTTTAATGCT AATGTTCAAA TTGATGAAAG ATTAAGACTT
GTTCATCTCA GTTTGTG

[show][hide][copy]CDS

>Vigan.07G107200.01
ATGGACGAAG ATTATGACTA CAGAAGGAAG GCCAAGATTG CTCTCATCGC CATTTTGGTC TTCGCTTCCC TCGCCGTCTT
TGCCTTGTTC GTTGCCTTTA CTTACTACTG CTACATCCTC AACAAGGTCT CCAACCGCCG CAAAAGCCTC AAAAAAGTTG
AAGACGCAAA CCTTAATGAG AATAGTGACT TTGCAAATCT GCAAGTTATT GCCGAGAAAG GACTTCAGGT GTTCACTTTC
AAGCAGCTGC ATTCTGCAAC AGGGGGCTTC AGCAAGTCGA ATGTCATTGG TCATGGTGGA TTTGGACTTG TTTACCGGGG
AGTGCTCAAT AATGGCAGGA AAGTTGCCAT TAAATTCATG GATCAGGCAG GAAAGCAGGG GGAAGAAGAA TTTAAAGTAG
AGGTGGAATT GCTAAGCCGG TTGCATTCAC CATATCTACT GGCATTGCTT GGGTACTGCT CTGATAGTAA TCATAAATTG
CTGGTGTATG AATTTATGGC TAATGGTGGA CTGCAGGAAC ATCTTTATCC TGTTAACAAT TCTATTATTA CACCCATAAA
GTTGGATTGG GAAACTCGAT TAAGAATAGC ACTTGAAGCT GCTAGGGGGT TAGAATATCT TCATGAGCAT GTCAGTCCCC
CAGTTATTCA CAGAGATTTT AAGAGCAGTA ACATCCTCTT GGATAAGAAA TTTCATGCCA AAGTTTCTGA TTTTGGATTG
GCAAAGCTGG GACCTGATAG AGCTGGTGGA CATGTTTCAA CTCGAGTTTT GGGCACCCAA GGATATGTTG CTCCCGAATA
TGCACTAACA GGGCATTTAA CCACAAAATC AGATGTGTAC AGTTATGGTG TTGTACTTTT GGAGCTGCTC ACTGGCCGAG
TGCCAGTAGA TATGAAGAGA CCTCCCGGAG AAGGTGTTCT TGTTTCTTGG GCTCTGCCTC TTTTGACCGA TAGGGAAAAG
GTTGTAAAGA TTATGGATCC TTCATTGGAG GGACAGTACT CTATGAAAGA GGTTGTCCAG GTGGCTGCAA TTGCTGCAAT
GTGTGTGCAA CCCGAGGCAG ACTATCGTCC TCTCATGGCA GATGTTGTGC AGTCATTGGT TCCACTGGTT AAGACTCAAA
GGTCCCCTTC AAAGGTGGGA AGCTGCTCTA GTTTCCACTC TCCCAAGTTG TCCCCCGGCC CAACATCTAC TTAG

[show][hide][copy]PROTEIN

>Vigan.07G107200.01
MDEDYDYRRK AKIALIAILV FASLAVFALF VAFTYYCYIL NKVSNRRKSL KKVEDANLNE NSDFANLQVI AEKGLQVFTF
KQLHSATGGF SKSNVIGHGG FGLVYRGVLN NGRKVAIKFM DQAGKQGEEE FKVEVELLSR LHSPYLLALL GYCSDSNHKL
LVYEFMANGG LQEHLYPVNN SIITPIKLDW ETRLRIALEA ARGLEYLHEH VSPPVIHRDF KSSNILLDKK FHAKVSDFGL
AKLGPDRAGG HVSTRVLGTQ GYVAPEYALT GHLTTKSDVY SYGVVLLELL TGRVPVDMKR PPGEGVLVSW ALPLLTDREK
VVKIMDPSLE GQYSMKEVVQ VAAIAAMCVQ PEADYRPLMA DVVQSLVPLV KTQRSPSKVG SCSSFHSPKL SPGPTST*