GBrowse Details

Vigan.07G107700.01

Basic Information:
Name: Vigan.07G107700.01
Multiple alignment
Variant Information
Position: Chr07:9763145..9766045 (+ strand)
Length: 2901
Functional Information:
Description: Similar to Chaperone protein dnaJ. [B7FJQ7, Medicago truncatula]
GO: Molecular Function: iron ion binding (GO:0005506)
Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro: 3Fe-4S ferredoxin (IPR001080)
DnaJ domain (IPR001623)
4Fe-4S ferredoxin-type, iron-sulpur binding domain (IPR017896)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.22,2.09,45.35,162.09,0.59,25.10,0.86,46.98
Arabidopsis thaliana homolog: AT2G42750.1
Automatic updates:
Name: NM_001255129 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DnaJ and 4Fe-4S dicluster domain-containing protein (LOC100809007), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:9763145..9763231 (+ strand)
Length: 87
Type: five_prime_UTR
Position: Chr07:9763232..9763462 (+ strand)
Length: 231
Type: CDS
Position: Chr07:9763658..9763786 (+ strand)
Length: 129
Type: CDS
Position: Chr07:9763871..9764000 (+ strand)
Length: 130
Type: CDS
Position: Chr07:9764146..9764266 (+ strand)
Length: 121
Type: CDS
Position: Chr07:9764788..9764869 (+ strand)
Length: 82
Type: CDS
Position: Chr07:9765007..9765060 (+ strand)
Length: 54
Type: CDS
Position: Chr07:9765259..9765297 (+ strand)
Length: 39
Type: CDS
Position: Chr07:9765434..9765533 (+ strand)
Length: 100
Type: CDS
Position: Chr07:9765659..9765789 (+ strand)
Length: 131
Type: CDS
Position: Chr07:9765790..9766045 (+ strand)
Length: 256
Type: three_prime_UTR


>Vigan.07G107700.01
TTCCAGTATT TTACAACTGC AGCAACCCAA GTTCACACAC ATATTGATTG GAACAAGGTT CTTCTGAGTG GAGTTTGGTT
TGGAATTATG GCTCAGTTAT TGTCTCCAGT GTGTATGGAG GCACTGAAAA TCCACAACCC ATCATTGAAT TTGTGTTCAA
GAGGCTCATG GCGGATGCTG GTGAAGACTC CAAGTCATTG CACTTTTGTG ACACAAAGTG GTAAGCGAAG AGGGTCTGGC
AGAGTAAGAG TTACAGCAGA AGATTCAGTT TCTCCCACTG ATACTATTGC AGATGACTAT TATGCAGTTC TGGGTCTGCT
TCCTGATGCC TCACCAGAGC AGATCAAGAA GGCATACTAC AATTGCATGA AATCTTGCCA CCCTGACTTG AGTGGCAATG
ATCCTGAGAC CACCAATTTC TGCATATTCA TTAATGAAGT GTACACGGTG CTAAGTGATC CCATCCAGCG CAGGATTTAT
GATGAAATTC ATGGCTATTC TTTAACTTCA ATCAATCCTT TCCTCGATGA TTCAAGCCCA AGGGATCATG CCTTTGTTGA
TGAGTTCAGC TGCATAGGCT GCAAAAACTG TGCAAATGTA GCCCCTGATG TGTTTGAAAT TGAAGAGGAC TTTGGAAGAG
CCAGAGCATT CAACCAATGT GGGAACCCTG AATTAGTTCA ACAGGCGATT GACAGTTGCC CTGTTAGCTG CATTCATTGG
ACATCTGCTG CACAACTATC ATTACTTGAA GATGAGATGC GCCGTGTCGA ACGAGTCAAT GTTGCCCTGA TGCTATCAGG
AATGGGAACA GCTTCAATTG ATGTTTTCAG AATGGCAAGT TCCAGATGGG AAAAGAGGCA ATCAAAAGTC TTGGAAAAAG
CAAAATTTAG AATGATGAAG CAAGAAGGTT CTGATAAGAA AAGTTCATAC TGGGACAATC TGTGGGGCAA ACAAAAAGAG
TACCAAAGTT CAGATGAGGA AGTTGAAGAA AGAGCAAGAA GAGCTGCTTC AGCAGCAAGA AGATGGAGGG AATACTCAAG
GAAGGGTGTT GATAATCCTC CAACATTTAA ACTCCCAGAA GCAAACCCTG CCAAGGAAAA ATGAACATTA CTTAAATTAT
CTTCTGTATA ATTTAGTCCC ATGTAATTAA TTCATGTATA GCCTCTCATG AACTAATGAG ATCTTTCTCA CTCTACTATC
TGTGATTGTA TATGCAGCAA CTATAGTTAT ACAAGGGGAA AATATAAGAA AACTATTACT AAGTCCTTTT ACTTTTTTTC
ATGAACAGCT TTTTCTCGAA TCATGGTTGT AGAATATTCT TCACGTGTGC ACAAATAATT GCAAACGAGT CTTGTCTTTA


>Vigan.07G107700.01
ATGGCTCAGT TATTGTCTCC AGTGTGTATG GAGGCACTGA AAATCCACAA CCCATCATTG AATTTGTGTT CAAGAGGCTC
ATGGCGGATG CTGGTGAAGA CTCCAAGTCA TTGCACTTTT GTGACACAAA GTGGTAAGCG AAGAGGGTCT GGCAGAGTAA
GAGTTACAGC AGAAGATTCA GTTTCTCCCA CTGATACTAT TGCAGATGAC TATTATGCAG TTCTGGGTCT GCTTCCTGAT
GCCTCACCAG AGCAGATCAA GAAGGCATAC TACAATTGCA TGAAATCTTG CCACCCTGAC TTGAGTGGCA ATGATCCTGA
GACCACCAAT TTCTGCATAT TCATTAATGA AGTGTACACG GTGCTAAGTG ATCCCATCCA GCGCAGGATT TATGATGAAA
TTCATGGCTA TTCTTTAACT TCAATCAATC CTTTCCTCGA TGATTCAAGC CCAAGGGATC ATGCCTTTGT TGATGAGTTC
AGCTGCATAG GCTGCAAAAA CTGTGCAAAT GTAGCCCCTG ATGTGTTTGA AATTGAAGAG GACTTTGGAA GAGCCAGAGC
ATTCAACCAA TGTGGGAACC CTGAATTAGT TCAACAGGCG ATTGACAGTT GCCCTGTTAG CTGCATTCAT TGGACATCTG
CTGCACAACT ATCATTACTT GAAGATGAGA TGCGCCGTGT CGAACGAGTC AATGTTGCCC TGATGCTATC AGGAATGGGA
ACAGCTTCAA TTGATGTTTT CAGAATGGCA AGTTCCAGAT GGGAAAAGAG GCAATCAAAA GTCTTGGAAA AAGCAAAATT
TAGAATGATG AAGCAAGAAG GTTCTGATAA GAAAAGTTCA TACTGGGACA ATCTGTGGGG CAAACAAAAA GAGTACCAAA
GTTCAGATGA GGAAGTTGAA GAAAGAGCAA GAAGAGCTGC TTCAGCAGCA AGAAGATGGA GGGAATACTC AAGGAAGGGT
GTTGATAATC CTCCAACATT TAAACTCCCA GAAGCAAACC CTGCCAAGGA AAAATGA

>Vigan.07G107700.01
MAQLLSPVCM EALKIHNPSL NLCSRGSWRM LVKTPSHCTF VTQSGKRRGS GRVRVTAEDS VSPTDTIADD YYAVLGLLPD
ASPEQIKKAY YNCMKSCHPD LSGNDPETTN FCIFINEVYT VLSDPIQRRI YDEIHGYSLT SINPFLDDSS PRDHAFVDEF
SCIGCKNCAN VAPDVFEIEE DFGRARAFNQ CGNPELVQQA IDSCPVSCIH WTSAAQLSLL EDEMRRVERV NVALMLSGMG
TASIDVFRMA SSRWEKRQSK VLEKAKFRMM KQEGSDKKSS YWDNLWGKQK EYQSSDEEVE ERARRAASAA RRWREYSRKG
VDNPPTFKLP EANPAKEK*