GBrowse Details

Vigan.07G108000.01

Basic Information:
Name: Vigan.07G108000.01
Multiple alignment
Variant Information
Position: Chr07:9804005..9811275 (- strand)
Length: 7271
Functional Information:
Description: Similar to Uncharacterized protein. [Q8LJR5, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:64.90,33.69,28.00,27.12,29.64,38.70,29.86,29.31
Arabidopsis thaliana homolog: AT1G06400.1
Automatic updates:
Name: NM_001249043 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small GTP-binding protein (LOC547655), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249558 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499822 (LOC100499822), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:9804005..9804520 (- strand)
Length: 516
Type: three_prime_UTR
Position: Chr07:9804521..9804956 (- strand)
Length: 436
Type: CDS
Position: Chr07:9810740..9810960 (- strand)
Length: 221
Type: CDS
Position: Chr07:9810961..9811275 (- strand)
Length: 315
Type: five_prime_UTR


>Vigan.07G108000.01
GGATCGGAAG AGAAAAATAA AGAAAGAAAG GAAATAGAAG AGAAGACAAA AGAAAAGAAA AGGAAAGGAA CGAAAGGGTT
TGGCAGAACA CGATCCCCAC ACTTCAGGGC AACCTTGTTT GGAGAACCTA AGTTTCAATA CCTTTTCTCT TTCCGCAAGA
AAATTCAAAA TTCCAATTCC GCAAATCGAA AATTCCCTCG CTTCTTTGCT CTTTCTCTCT CTCTCTCTCT CTCTGTCTTT
TTCTGTAACA TCGTAATCGA TCAGTTGAAA GCTAAGAAGA GAGTGAGTTG GAGAAGGTTC TGGTAGGATC CATCGATGGC
GGGGTACAAG GCCGATGACG AGTACGATTA CCTTTTCAAG CTGGTTCTGA TCGGTGATTC CGGCGTCGGG AAGTCCAACC
TTCTCTCGCG CTTCACGCGG AACGAGTTCA ATTTGGAGTC CAAGTCTACC ATAGGAGTTG AGTTCGCCAC CAAGAGTTTG
AATATCGATT CCAAGGTCAT CAAGGCTCAG ATTTGGGACA CCGCTGGCCA GGAAAGGTAC CGTGCCATTA CTAGTGCTTA
CTACCGAGGA GCTGTTGGTG CCTTACTTGT CTATGATGTC ACACGCCGTG CCACATTTGA GAATGCTGCA AGATGGTTGA
AAGAGTTGAG AGATCACACA GACCCCAACA TTGTGGTCAT GCTTATTGGA AATAAGTCAG ATCTTCGACA CCTTGTTGCT
GTTCCAACAG AAGATGGGAA ATCTTTTGCA GAGAGGGAAT CTCTGTACTT CATGGAGACT TCTGCTTTAG AAGCAACCAA
TGTTGAAAAT GCTTTTACTG AGGTTCTTTC TCAGATTTAC CGCATAGTGA GCAAGAGAGC AGTTGAGGCT GGCGACAACG
CCAGTTCCTC CACTGTCCCG TCTAAAGGAC AGACTATAAA CGTGAAAGAC GATTCCTCAG TTTTGAAGAA AATTGGATGC
TGCTCGAACT AGATGCTTCA TCTATGGCAG TGGTTTTCAT GGCCTGTTTC ATCTTGTAAA TGCCTACACT GGAATTGGGA
TATCGTGTAG AATAAGGCTA GTCTTGCATA TTATTTTGAG CAGTCTTTAC AATTTACAAG CATCAACCAT ACGCAGGATT
TATGTTTCGT AAACCGGTCA TTCTAAAACG TGTTTGAAAC AAATAGGTCT ACACCCAAGT TCATCATATA GTTTTAAGTT
TTATGTGCAG GATCTTGATA TTTGCTATTC TCTAATTATG ATGCAGCCAG TGGCAGTTCG AACATCTATT TTAGAATTGA
AGTTAAGGTA TGGAGCCCTT CTGTTTGGTT TCGTTGAAGT GTTCCCAGAT CATATGGGTT GTACATGATC AGAGTTGAAG
TTATTTTTAA TTGCTGAATA TAAAGATTGG AATTAAAATA ATATGTTTCT AAAATTATTA TATCGGCAAA ATATGTTTTA
TTTGAAACCA AATTAGTATA ATTTTCTTTC TCGTTTTTTC TTCCTTCG

>Vigan.07G108000.01
ATGGCGGGGT ACAAGGCCGA TGACGAGTAC GATTACCTTT TCAAGCTGGT TCTGATCGGT GATTCCGGCG TCGGGAAGTC
CAACCTTCTC TCGCGCTTCA CGCGGAACGA GTTCAATTTG GAGTCCAAGT CTACCATAGG AGTTGAGTTC GCCACCAAGA
GTTTGAATAT CGATTCCAAG GTCATCAAGG CTCAGATTTG GGACACCGCT GGCCAGGAAA GGTACCGTGC CATTACTAGT
GCTTACTACC GAGGAGCTGT TGGTGCCTTA CTTGTCTATG ATGTCACACG CCGTGCCACA TTTGAGAATG CTGCAAGATG
GTTGAAAGAG TTGAGAGATC ACACAGACCC CAACATTGTG GTCATGCTTA TTGGAAATAA GTCAGATCTT CGACACCTTG
TTGCTGTTCC AACAGAAGAT GGGAAATCTT TTGCAGAGAG GGAATCTCTG TACTTCATGG AGACTTCTGC TTTAGAAGCA
ACCAATGTTG AAAATGCTTT TACTGAGGTT CTTTCTCAGA TTTACCGCAT AGTGAGCAAG AGAGCAGTTG AGGCTGGCGA
CAACGCCAGT TCCTCCACTG TCCCGTCTAA AGGACAGACT ATAAACGTGA AAGACGATTC CTCAGTTTTG AAGAAAATTG
GATGCTGCTC GAACTAG

>Vigan.07G108000.01
MAGYKADDEY DYLFKLVLIG DSGVGKSNLL SRFTRNEFNL ESKSTIGVEF ATKSLNIDSK VIKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRRAT FENAARWLKE LRDHTDPNIV VMLIGNKSDL RHLVAVPTED GKSFAERESL YFMETSALEA
TNVENAFTEV LSQIYRIVSK RAVEAGDNAS SSTVPSKGQT INVKDDSSVL KKIGCCSN*