GBrowse Details

Vigan.07G114800.01

Basic Information:
Name: Vigan.07G114800.01
Multiple alignment
Variant Information
Position: Chr07:10674245..10676855 (- strand)
Length: 2611
Functional Information:
Description: Similar to 50S ribosomal protein L24, chloroplastic-like. [XP_004487627.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L24 (IPR003256)
KOW (IPR005824)
Ribosomal protein L24/L26, conserved site (IPR005825)
Translation protein SH3-like domain (IPR008991)
Ribosomal protein L2 domain 2 (IPR014722)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.21,13.21,31.54,164.24,13.25,30.67,10.12,23.46
Arabidopsis thaliana homolog: AT5G54600.1
Automatic updates:
Name: NM_001248622 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500009 (LOC100500009), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251123 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306643 (LOC100306643), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:10674245..10674500 (- strand)
Length: 256
Type: three_prime_UTR
Position: Chr07:10674501..10674710 (- strand)
Length: 210
Type: CDS
Position: Chr07:10674988..10675218 (- strand)
Length: 231
Type: CDS
Position: Chr07:10675470..10675508 (- strand)
Length: 39
Type: CDS
Position: Chr07:10676658..10676765 (- strand)
Length: 108
Type: CDS
Position: Chr07:10676766..10676855 (- strand)
Length: 90
Type: five_prime_UTR


>Vigan.07G114800.01
CTCACCACTG CTCTATTCTT CTCACTCTGG CATCCTTTTA TCCAAAACCA TTATTATCAG AAGCAGAAAT AACGAGAGGT
TGCAGCAACA ATGGCAGCCA TGGCTGCTCT TCAGAGCTCA ATGACTGGTC TTTCCCTCTC CTCCAACTCT TTCTTAGGCC
AGCGCTTTTC CCCCATCACA TTCCCCTCTC TTCTTCCGGG TAAGTCAACC GAGAAGCAAT GTCCCATTGT AATGAAGCTT
AAACGATGGG AGCGAAAGAA GTGTAAACCA AACAGCCTTC CTATCTTGCA AAAAATGCAT GTTAAACTTG GAGATACGGT
GCAAATCATA ACTGGAAGTG AAAGAGGTAA AGTTGGGGAG ATCACTAGAA TCTTCAAGCA TAACAGCACA GTAATAGTGA
AAGATTTAAA TTTGAAGACA AAGCATGTCA AGAGTAGAGA AGAGGGGGAA CCGGGCGAAA TTATTAAGAT TGAAGGTCCT
ATCCACAGCT CAAATGTGAT GCTGTACTCG AAAGATCAGA AGGTAGCAAG CCGTGTGGGA CACAAAGTCC TTGATAATGG
TAATAAAGTT CGGTACCTTA TAAAGACTGG AGAAATAATT GACAGTTCAG AAAATTGGAA GAAACTGAAG GAGGAGACTA
CTAAGAAACC TGAAGAAGCT GCTGCTGCTG CTGCATAATT TTTCTTGTGT AGTTCATTCA TTCTCTGGTA ATGTAACTCT
AGCTGTACTT GTTGTGCTCA GTTTTTTTTC ATTTTATCAT CTGATGTATA TTTTGGTCTG TCTGTTGATC TCCATATACA
AAAACCAGGG TGATTAAATT TGTCTATTGG TTGTTCACTT TGAGCAAAGT GAATCTTTTT GAAGAGAAAT TGTTCATGAA
AGTGGAAATG GCTGTTTTTT TCTGAGTATC TCTGCTTAAT TCAACCAGTT ATTG

>Vigan.07G114800.01
ATGGCAGCCA TGGCTGCTCT TCAGAGCTCA ATGACTGGTC TTTCCCTCTC CTCCAACTCT TTCTTAGGCC AGCGCTTTTC
CCCCATCACA TTCCCCTCTC TTCTTCCGGG TAAGTCAACC GAGAAGCAAT GTCCCATTGT AATGAAGCTT AAACGATGGG
AGCGAAAGAA GTGTAAACCA AACAGCCTTC CTATCTTGCA AAAAATGCAT GTTAAACTTG GAGATACGGT GCAAATCATA
ACTGGAAGTG AAAGAGGTAA AGTTGGGGAG ATCACTAGAA TCTTCAAGCA TAACAGCACA GTAATAGTGA AAGATTTAAA
TTTGAAGACA AAGCATGTCA AGAGTAGAGA AGAGGGGGAA CCGGGCGAAA TTATTAAGAT TGAAGGTCCT ATCCACAGCT
CAAATGTGAT GCTGTACTCG AAAGATCAGA AGGTAGCAAG CCGTGTGGGA CACAAAGTCC TTGATAATGG TAATAAAGTT
CGGTACCTTA TAAAGACTGG AGAAATAATT GACAGTTCAG AAAATTGGAA GAAACTGAAG GAGGAGACTA CTAAGAAACC
TGAAGAAGCT GCTGCTGCTG CTGCATAA

>Vigan.07G114800.01
MAAMAALQSS MTGLSLSSNS FLGQRFSPIT FPSLLPGKST EKQCPIVMKL KRWERKKCKP NSLPILQKMH VKLGDTVQII
TGSERGKVGE ITRIFKHNST VIVKDLNLKT KHVKSREEGE PGEIIKIEGP IHSSNVMLYS KDQKVASRVG HKVLDNGNKV
RYLIKTGEII DSSENWKKLK EETTKKPEEA AAAAA*