VIGGS:GBrowse

Vigan.07G123700.01

Basic Information:

Name:	Vigan.07G123700.01 Multiple alignment Variant Information
Position:	Chr07:12281709..12288166 (+ strand)
Length:	6458

Functional Information:

Description:	Similar to uncharacterized LOC101224066. [XP_004171452.1, Cucumis sativus]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:195.28,99.81,16.79,21.14,27.08,21.27,25.28,20.39

Automatic updates:

Name:	NM_001255551 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100779923 (LOC100779923), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:12281709..12281819 (+ strand)
Length:	111
Type:	five_prime_UTR

Position:	Chr07:12281820..12281904 (+ strand)
Length:	85
Type:	CDS

Position:	Chr07:12282124..12282178 (+ strand)
Length:	55
Type:	CDS

Position:	Chr07:12287751..12287913 (+ strand)
Length:	163
Type:	CDS

Position:	Chr07:12287914..12288166 (+ strand)
Length:	253
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G123700.01
TTTCTTTCAG AAATACGTTT TAATACATAA TAGAAAAGGG TATTTGCTTT TGCCAAAACC AACCGCACTG CACTTTCTCT
GCTTCGCCGT CGCCTCCTCT TCCCAGCAAT CATGGCAAAA AATAGGAATA ATAAGAAGAG GAACGGCGTC GTTTCAATGG
ATACCACCGA CGCATCCGTT TCGGAACAAC CTCAAGCAAT GGATACGTCA GAGTCAAGAG TTCAAAATGC GGTTTCCGGT
GCTACCAATA TGAAGATGAA GCAGAAAGGA AGGCCAATGA AGAGATCAAA AAATGTCCGA AAGATGAAAG CAATAGCCAA
AGCTGTATCC TCTAACGAGA AGTCCATTGA GAAGGTGTCG AAGAATGAAA ACAAAAGAAG TAGAGTTAAA TCTGCAAAAT
CACTCTATGA ATGAACGATC AAGTGCCTCA TATCACTTGA AGAAAGTTTG ATATATCAAG ATACATGCCT TTTAAATTTA
ATGTAGCTAG ATATAATTAA TTATTAGTTT AAGAGTTCTT TTTAAGAATG AAGTTCCTTT CTTGTTGCAT CCTTATGGTA
ATTATGATTT ATAGTTTTAT GTACTTTCTT TCTGCTGTCT AAATGATGTT AAGGTAAAGT CATAGCTCCG TTTCTACTAT
TAAGCATTTG AGTTCATTCA CAGCCCA

[show][hide][copy]CDS

>Vigan.07G123700.01
ATGGCAAAAA ATAGGAATAA TAAGAAGAGG AACGGCGTCG TTTCAATGGA TACCACCGAC GCATCCGTTT CGGAACAACC
TCAAGCAATG GATACGTCAG AGTCAAGAGT TCAAAATGCG GTTTCCGGTG CTACCAATAT GAAGATGAAG CAGAAAGGAA
GGCCAATGAA GAGATCAAAA AATGTCCGAA AGATGAAAGC AATAGCCAAA GCTGTATCCT CTAACGAGAA GTCCATTGAG
AAGGTGTCGA AGAATGAAAA CAAAAGAAGT AGAGTTAAAT CTGCAAAATC ACTCTATGAA TGA

[show][hide][copy]PROTEIN

>Vigan.07G123700.01
MAKNRNNKKR NGVVSMDTTD ASVSEQPQAM DTSESRVQNA VSGATNMKMK QKGRPMKRSK NVRKMKAIAK AVSSNEKSIE
KVSKNENKRS RVKSAKSLYE *