GBrowse Details

Vigan.07G126100.01

Basic Information:
Name: Vigan.07G126100.01
Multiple alignment
Variant Information
Position: Chr07:12656634..12658767 (- strand)
Length: 2134
Functional Information:
Description: Similar to NAC domain protein. [B2ZGR7, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:157.05,104.25,77.19,6.53,5.07,6.97,2.93,3.06
Arabidopsis thaliana homolog: AT3G15500.1
Automatic updates:
Name: KT031217 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_1 NAC transcription factor (Glyma12g35000.1) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031218 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_59 NAC transcription factor (Glyma13g35550.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KY661969 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar Shengdou No.9 SIN1 (SIN1) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001251495 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAC domain protein NAC4 (NAC4), mRNA.
PubMed ID: 16919368 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:12656634..12657129 (- strand)
Length: 496
Type: three_prime_UTR
Position: Chr07:12657130..12657705 (- strand)
Length: 576
Type: CDS
Position: Chr07:12657876..12658144 (- strand)
Length: 269
Type: CDS
Position: Chr07:12658231..12658411 (- strand)
Length: 181
Type: CDS
Position: Chr07:12658412..12658767 (- strand)
Length: 356
Type: five_prime_UTR


>Vigan.07G126100.01
ATTTTTTATT TTTTTTTTAA CTTTGAGTTT TACGGCTACA TGCAATGCAC CTACCGAACG ACCACGACCG TATCGGAACC
GATAAGGTCG ACTGTCTGGA CGCCTTTTTG TTCCAGACAC GTGGTGAAGT CCAACAGGCG AGTAACTCAA GTGGGTCCCG
CTCTCCAACA GTAAGACAAA GATAACCGTA CTTATCTTAC CCCATGTGCC GCTATAAATA TCGACCAATG TCTACCGGTT
TCTGAGAAAA AAAGAAGAAG AAAGGAAAGA GAAAACAAAA CATCTTCCTC TGCACTACTT CATCCTCATC GGTTTTCTTT
GTTGTGTTAT CTGAGACGAT TGAATTGCTT TCGAAAATGG GAGTTCCAGA GAAAGATCCT CTTGCCCAGT TGAGTCTACC
ACCTGGTTTT CGGTTCTACC CCACCGACGA GGAGCTTCTC GTTCAGTATC TCTGCCGCAA GGTCGCCGGC CACCATTTCT
CTCTCCCAAT CATTGCTGAA ATTGATTTGT ACAAGTTCGA CCCATGGGTT CTCCCAAGCA AGGCGATTTT CGGGGAGAAA
GAGTGGTACT TTTTCAGCCC TCGAGACAGG AAGTACCCAA ACGGGTCTCG ACCCAACAGA GTAGCCGGGT CGGGGTATTG
GAAAGCCACC GGAACCGACA AGATCATCAC CACCGAGGGT AGAAAAGTTG GCATAAAAAA AGCTCTGGTC TTTTACGTTG
GCAAAGCTCC TAAAGGCACC AAAACCAATT GGATCATGCA CGAGTATCGC CTCCTTGACT CTTCCCGAAA GACCACCGGA
ACCAAGCTGG ACGATTGGGT TCTGTGTCGT ATATACAAGA AGAACTCGAG TGCACAGAAG GCGGCGCAGA ACGGCGTCGT
TTCGAGCAGG GAACACACTC AATACAGCAA CGGTTCGTCG TCGTCGTCTT CGTCCCATCT GGACGACGTT CTGGAATCGC
TGCCGACGAT CGACGAACGA TGTTTCGCGA TGCCACGTGT CAGTACGATG CAGGCACAGC AGGAGGAGAA GGTGAGCGTT
CATCAGAACC TGGGTGCGGG AGGGTTGGTG GATTGGGCCA ACCCTGCGGT TCTGAATTCG GTGGGTGATT TCGTTTCGGG
GAATAATCAA GTGGTGCAGG AGCACACGCA GGGGATGGTG AACTACGGCG GGTGCAATGA CCTTTATGTC CCCACCTTCT
GCCACGTGGA GTCTACGCTT CCGCAAAAGA TGGAGGAAGA GGTGCAAAGC GGCGTGAGAA GCCAAAACAA CAATAACCCG
TGGTTTCTTC AGAACGATTA TACGCAGGGG TATCAGAACC CGGTGGACAC GTGTGGGTTT AAGTTCCCGG TTCAGCCGGT
GGGATTCGGG TTCAGGCAAT GAAGTTCAGC GGGTTATGAA AAAAGAAATA ATGTTTATTT TGTGTAAATA GGTGGGGATT
GTTTGGGCTA ACTCGTTGGG TTTTAGGTTC CTTTTTAGAA AAGGTGAAAA TTTTGGTCTT CATTTTCGGC TAAAGAATGA
ATCGATCCAC GAGATAAAGC AATGATGGAA TGGAAGCATT TAATTTATTA GAAGGTAGTT TTCGGCCACA CAAAGCTTAC
TCACCCACAT GAATCACATT TTGTACTTAA AAATCAACTT CAAATTGTTC CAGTATTAGG TTTCGTTAAT TTCGATCTTC
CTATGTCCAC ATGTTTCTTT ATGCTGCTTG AAATTTTTTA ATACTGTATA CGTAGTTTAT GCACGTGTAA AATGAGTCAC
CGTTCGGAAG GTAGGCGCAT TGCCATTACC AGCAAGAAAG AGATAAGGTT CGTATATATT GAATTTTTCT TCTTATCTGT
ATTTTTGACT ATTTTCAGCA GAGAATATAG AAAATGGA

>Vigan.07G126100.01
ATGGGAGTTC CAGAGAAAGA TCCTCTTGCC CAGTTGAGTC TACCACCTGG TTTTCGGTTC TACCCCACCG ACGAGGAGCT
TCTCGTTCAG TATCTCTGCC GCAAGGTCGC CGGCCACCAT TTCTCTCTCC CAATCATTGC TGAAATTGAT TTGTACAAGT
TCGACCCATG GGTTCTCCCA AGCAAGGCGA TTTTCGGGGA GAAAGAGTGG TACTTTTTCA GCCCTCGAGA CAGGAAGTAC
CCAAACGGGT CTCGACCCAA CAGAGTAGCC GGGTCGGGGT ATTGGAAAGC CACCGGAACC GACAAGATCA TCACCACCGA
GGGTAGAAAA GTTGGCATAA AAAAAGCTCT GGTCTTTTAC GTTGGCAAAG CTCCTAAAGG CACCAAAACC AATTGGATCA
TGCACGAGTA TCGCCTCCTT GACTCTTCCC GAAAGACCAC CGGAACCAAG CTGGACGATT GGGTTCTGTG TCGTATATAC
AAGAAGAACT CGAGTGCACA GAAGGCGGCG CAGAACGGCG TCGTTTCGAG CAGGGAACAC ACTCAATACA GCAACGGTTC
GTCGTCGTCG TCTTCGTCCC ATCTGGACGA CGTTCTGGAA TCGCTGCCGA CGATCGACGA ACGATGTTTC GCGATGCCAC
GTGTCAGTAC GATGCAGGCA CAGCAGGAGG AGAAGGTGAG CGTTCATCAG AACCTGGGTG CGGGAGGGTT GGTGGATTGG
GCCAACCCTG CGGTTCTGAA TTCGGTGGGT GATTTCGTTT CGGGGAATAA TCAAGTGGTG CAGGAGCACA CGCAGGGGAT
GGTGAACTAC GGCGGGTGCA ATGACCTTTA TGTCCCCACC TTCTGCCACG TGGAGTCTAC GCTTCCGCAA AAGATGGAGG
AAGAGGTGCA AAGCGGCGTG AGAAGCCAAA ACAACAATAA CCCGTGGTTT CTTCAGAACG ATTATACGCA GGGGTATCAG
AACCCGGTGG ACACGTGTGG GTTTAAGTTC CCGGTTCAGC CGGTGGGATT CGGGTTCAGG CAATGA

>Vigan.07G126100.01
MGVPEKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP SKAIFGEKEW YFFSPRDRKY
PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY VGKAPKGTKT NWIMHEYRLL DSSRKTTGTK LDDWVLCRIY
KKNSSAQKAA QNGVVSSREH TQYSNGSSSS SSSHLDDVLE SLPTIDERCF AMPRVSTMQA QQEEKVSVHQ NLGAGGLVDW
ANPAVLNSVG DFVSGNNQVV QEHTQGMVNY GGCNDLYVPT FCHVESTLPQ KMEEEVQSGV RSQNNNNPWF LQNDYTQGYQ
NPVDTCGFKF PVQPVGFGFR Q*