GBrowse Details

Vigan.07G127600.01

Basic Information:
Name: Vigan.07G127600.01
Multiple alignment
Variant Information
Position: Chr07:12822482..12824981 (+ strand)
Length: 2500
Functional Information:
Description: Similar to Fiber protein Fb34. [T2DPH5, Phaseolus vulgaris]
InterPro: Protein of unknown function DUF1218 (IPR009606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.54,6.63,46.91,20.66,29.41,67.41,74.01,124.60
Arabidopsis thaliana homolog: AT4G27435.1
Automatic updates:
Name: NM_001251276 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499677 (LOC100499677), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251564 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305647 (LOC100305647), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:12822482..12822688 (+ strand)
Length: 207
Type: five_prime_UTR
Position: Chr07:12822689..12822778 (+ strand)
Length: 90
Type: CDS
Position: Chr07:12823999..12824204 (+ strand)
Length: 206
Type: CDS
Position: Chr07:12824424..12824688 (+ strand)
Length: 265
Type: CDS
Position: Chr07:12824689..12824981 (+ strand)
Length: 293
Type: three_prime_UTR


>Vigan.07G127600.01
ATTTTCCACA CTTTTTTTTA TTATTTTCAA CTATCTTTGC TTTTTAATAT TTTTTTGGTC ATTTTTGCTG CGTAATTTGC
ATTTAGAAGG AATCCCAACT TGCTTTTATA GTTGCCAAGA TCAGTGAAGA GGCAACACAA CAGAGAGAGA GAGAAACAGC
AAATTCAACA TTGTTCTGTT CTTCAGCAAC ATTCTCTACT CACATCCATG GCTTCCAAAC TCTTACTCAT TACTGTCTTC
GTTTTTGACT TGATTGCTTT TGGATTGGCC GTGGCTGCTG AGCAGAGAAG AAGCACAGCT AAGATTGTGC AGGACAACGA
TGTGAACTAT AACTACTGTG TCTATAAGTC TGATATAGCT ACTGGCTATG GGGTCGGAGC ATTTTTGTTC CTCTTGGTTA
GTCAAGTCCT GATAATGGTG GCAAGCCGAT GCTTCTGTTG TGGGAAGCCT CTAAGCCCAG GAGGCTCAAG GGCTTGTGCA
ATTGTCCTTT TCATAATCTG CTGGGTGTTT TTCATAATAG CTGAGATCTG CTTGTTAGCT GGATCAGTGG AAAATGCGTA
CCACACCAAG TATAGGCACA ACATTTTTGC GAACAAAGAG CTATCTTGCG AAACAGTTAG GAAGGGAGTG TTTGCTGCTG
GTGCTGCTTT TGTTTTCTTC ACTGCCATTG TTTCTCAATT CTACTATGTC AACTATTCAA GTGCCAGGGA AAGCTTCCAA
CCTTATGGTG GCGGTGAGAC TGGTGTAGGT ATGGGAACCT ACAAATGAGC TTGTTAGTTA AGAATTTTAG AGCCTAAATT
TAGGTGTGAC TATACCTGGA GTCTGGATTC TGCAGCACAT TTCTTGGATT TTGTTGCATT TGTTGTATTT ACAGTTTAGC
TACTTTACTA GAATGAATGT ATAAGTTGTA TCTTAGTAAT TTTTTGTTGT CACATATTGT GGTATGTTAT GGGTGATTCA
TTCATTGCCT CTTTACACTT TTGGAGTTTT TGTCATGTAT ACATATCAAC AAGAGAAATA ATTTCTTGAT TTATATTGTT
TCTGCATACT AATAAATTGT A

>Vigan.07G127600.01
ATGGCTTCCA AACTCTTACT CATTACTGTC TTCGTTTTTG ACTTGATTGC TTTTGGATTG GCCGTGGCTG CTGAGCAGAG
AAGAAGCACA GCTAAGATTG TGCAGGACAA CGATGTGAAC TATAACTACT GTGTCTATAA GTCTGATATA GCTACTGGCT
ATGGGGTCGG AGCATTTTTG TTCCTCTTGG TTAGTCAAGT CCTGATAATG GTGGCAAGCC GATGCTTCTG TTGTGGGAAG
CCTCTAAGCC CAGGAGGCTC AAGGGCTTGT GCAATTGTCC TTTTCATAAT CTGCTGGGTG TTTTTCATAA TAGCTGAGAT
CTGCTTGTTA GCTGGATCAG TGGAAAATGC GTACCACACC AAGTATAGGC ACAACATTTT TGCGAACAAA GAGCTATCTT
GCGAAACAGT TAGGAAGGGA GTGTTTGCTG CTGGTGCTGC TTTTGTTTTC TTCACTGCCA TTGTTTCTCA ATTCTACTAT
GTCAACTATT CAAGTGCCAG GGAAAGCTTC CAACCTTATG GTGGCGGTGA GACTGGTGTA GGTATGGGAA CCTACAAATG
A

>Vigan.07G127600.01
MASKLLLITV FVFDLIAFGL AVAAEQRRST AKIVQDNDVN YNYCVYKSDI ATGYGVGAFL FLLVSQVLIM VASRCFCCGK
PLSPGGSRAC AIVLFIICWV FFIIAEICLL AGSVENAYHT KYRHNIFANK ELSCETVRKG VFAAGAAFVF FTAIVSQFYY
VNYSSARESF QPYGGGETGV GMGTYK*