VIGGS:GBrowse

Vigan.07G130100.01

Basic Information:

Name:	Vigan.07G130100.01 Multiple alignment Variant Information
Position:	Chr07:14081061..14083971 (- strand)
Length:	2911

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M393, Glycine max]
GO:	Biological Process: glycerol ether metabolic process (GO:0006662)
	Biological Process: cell redox homeostasis (GO:0045454)
	Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro:	Thioredoxin (IPR005746)
	Thioredoxin-like fold (IPR012336)
	Thioredoxin domain (IPR013766)
	Thioredoxin, conserved site (IPR017937)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:189.08,58.09,76.30,557.76,25.85,90.82,14.93,84.77
Arabidopsis thaliana homolog:	AT3G15360.1

Automatic updates:

Name:	NM_001249138 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100526924 (LOC100526924), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:14081061..14081438 (- strand)
Length:	378
Type:	three_prime_UTR

Position:	Chr07:14081439..14081752 (- strand)
Length:	314
Type:	CDS

Position:	Chr07:14083558..14083789 (- strand)
Length:	232
Type:	CDS

Position:	Chr07:14083790..14083971 (- strand)
Length:	182
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G130100.01
CTGCAAGATG TAAACCAATG GGAGTGTCTT AGTGTCGATT CAGTTTCATC TCATCCACAC AATAATAGTA CCAATATCTT
CCACAAAAAA AAGTAGAAAT AGTATTGGGA ATTGTAACAT AGTTCAACGT AACACTCTTT TGATTCCACA ATTCTTCTTC
TGGACCTGCG ATTCTCGCAA TCATGGCCAC CTTGCAACTC CAATCCCTAA CCCTCACTCG CTCCTCCACA CTCCCTTCCC
TCACCTCTCC ACCGATTCCC GTCACCGCCC GCCTCAACTC CGCTGCGCTG CCGCGCTACT CTGGCCTCCG GCTCCGAGCC
ACCGTTGGAA CCGTTTTTTC GACTCGCGCC GCCTCGAGAA CCGCTCCTCG CGGCGGACGC ATCGCTTGTG AGGCACAGGA
TACCGCCATC GAAGTGACTT CTATTACTGA TGCAAATTGG CAATCACTTG TGCTTGAATC CGAGACTCCC GTACTGGTTG
AATTCTGGGC CCCATGGTGC GGTCCCTGCC GAATGATCCA CCCGATAATC GATGAACTGG CCAAGGAATA TGTTGGTAAG
CTGAAGTGTT ACAAACTCAA TACTGATGAG AGCCCTTCAA CTGCCAGCCG TTATGGGATT CGAAGCATTC CCACTGTCAT
TATCTTTAAG AATGGTGAGA AGAAAGATAC AGTTATTGGA GCTGTGCCCA AGACAACATT GACCTCAAGC ATAGAAAAAT
TCCTGTGAGC AAATGAAAGT AAAGCTATTT TTCTCGTTAG CTTCCTCTCA TCTAAGCCAA ATATCAGGTT GGGATTATTT
GTTTCTTAAA TAACCATTTA TGGTCCTGTA TAGTTATGGA TGCAAACCAT ATTTTCTGAT TTCTTTAGAT AATCATAATT
AACAATGTGT TGCGTAAATT TGCCATCTAT TATATCTCAA ATTAAATCTA TTTTGCATCT TGGCTCCTGT TCTCTCCAGT
TCTTAACCGT TCACATAATT GGCTGAAGAT TGTGTGGGCA CGTGGGGGTT ACGAAACAAA TTCTCATTAA AATGAGATAA
ATGTAGTTGA AAAGAAAAAT CTTATCAAAA TGAGTAATTG AAGATTAGTT AATGAATATT TCATGT

[show][hide][copy]CDS

>Vigan.07G130100.01
ATGGCCACCT TGCAACTCCA ATCCCTAACC CTCACTCGCT CCTCCACACT CCCTTCCCTC ACCTCTCCAC CGATTCCCGT
CACCGCCCGC CTCAACTCCG CTGCGCTGCC GCGCTACTCT GGCCTCCGGC TCCGAGCCAC CGTTGGAACC GTTTTTTCGA
CTCGCGCCGC CTCGAGAACC GCTCCTCGCG GCGGACGCAT CGCTTGTGAG GCACAGGATA CCGCCATCGA AGTGACTTCT
ATTACTGATG CAAATTGGCA ATCACTTGTG CTTGAATCCG AGACTCCCGT ACTGGTTGAA TTCTGGGCCC CATGGTGCGG
TCCCTGCCGA ATGATCCACC CGATAATCGA TGAACTGGCC AAGGAATATG TTGGTAAGCT GAAGTGTTAC AAACTCAATA
CTGATGAGAG CCCTTCAACT GCCAGCCGTT ATGGGATTCG AAGCATTCCC ACTGTCATTA TCTTTAAGAA TGGTGAGAAG
AAAGATACAG TTATTGGAGC TGTGCCCAAG ACAACATTGA CCTCAAGCAT AGAAAAATTC CTGTGA

[show][hide][copy]PROTEIN

>Vigan.07G130100.01
MATLQLQSLT LTRSSTLPSL TSPPIPVTAR LNSAALPRYS GLRLRATVGT VFSTRAASRT APRGGRIACE AQDTAIEVTS
ITDANWQSLV LESETPVLVE FWAPWCGPCR MIHPIIDELA KEYVGKLKCY KLNTDESPST ASRYGIRSIP TVIIFKNGEK
KDTVIGAVPK TTLTSSIEKF L*