GBrowse Details

Vigan.07G132700.01

Basic Information:
Name: Vigan.07G132700.01
Multiple alignment
Variant Information
Position: Chr07:14496380..14501956 (+ strand)
Length: 5577
Functional Information:
Description: Similar to RNA-binding protein YlmH-like isoform X1. [XP_004488725.1, Cicer arietinum]
GO: Molecular Function: RNA binding (GO:0003723)
InterPro: RNA-binding S4 domain (IPR002942)
Photosystem II S4 (IPR017506)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.70,2.84,3.59,9.83,2.32,4.00,1.03,3.14
Arabidopsis thaliana homolog: AT1G53120.1
Automatic updates:
Name: NM_001254227 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative RNA-binding protein ylmH-like (LOC100793767), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:14496380..14496420 (+ strand)
Length: 41
Type: five_prime_UTR
Position: Chr07:14496421..14496574 (+ strand)
Length: 154
Type: CDS
Position: Chr07:14498817..14498926 (+ strand)
Length: 110
Type: CDS
Position: Chr07:14499129..14499260 (+ strand)
Length: 132
Type: CDS
Position: Chr07:14499348..14499421 (+ strand)
Length: 74
Type: CDS
Position: Chr07:14499517..14499622 (+ strand)
Length: 106
Type: CDS
Position: Chr07:14500187..14500255 (+ strand)
Length: 69
Type: CDS
Position: Chr07:14500649..14500713 (+ strand)
Length: 65
Type: CDS
Position: Chr07:14500791..14500889 (+ strand)
Length: 99
Type: CDS
Position: Chr07:14501467..14501566 (+ strand)
Length: 100
Type: CDS
Position: Chr07:14501656..14501718 (+ strand)
Length: 63
Type: CDS
Position: Chr07:14501719..14501956 (+ strand)
Length: 238
Type: three_prime_UTR


>Vigan.07G132700.01
GTTGGTGAGT TCGAGGTAAT CCCAACAAAG GTGGAACCAC CATGGCTGCA GCCACAAGCT TTGGAACTGC ATGTATTCTA
AGAAGAGCAG CTCAGGCATT TGCAGTATCA CATTCTCATA TCATCAACAG CAATGCCACC TTCTCTTTTC AAAGGAAACT
TTCCTCTCAT ATTCTATCCG TTTCTACTAG TTCAGCTTCA GGTGTAAGTC AAGCAGTTCA AGCTTTAAAG GGAGAAGTTG
ACGTGCTAAT CAAGGGAGTA GGAGAAAGAA ATGTAGCAAA AGAAGTAAAA CATATTCTTG AGATGGCTAG ACGAGCATCA
TCGAAGCGGG AAACTCTCCA TACAGATTTT CTAACACCTC CAGTGCTAAA GGAATCTATG CAAATTTTGG AAAAATTAGC
AGACGTGAAA GCAATTGCTC AAGGAGGTTA TCCTCAGGCT GAACGCTGTC GGATATCAGT TGGACATCCA GAAGAACTGA
CTAGTGATCC AGATGTTATT TCAGCATTAA GCATTAAAGG GAACTTCCAG TTTGAACCTT GCTCACATGG TGACTTCCTT
GGCTCAATTC TTGGTACAGG AATTGTCAGG GAGAAACTTG GGGATATTAT ATTGCAGGGA GAACAGGGTG CGCAAATTAT
TGTTGTGCCA GAACTGGTTG AATTTCTTAT GTCAACCTTG GTTAAGGTTC GTAATGTTCC TGTAACTTGC ACCAAGATAC
CATTAATTTC TCTTGATTAT GAACCACCAA GAACAAAATC ATTCAAAACT ATAGAAGCAT CGCTAAGAGT TGATGCACTT
GCTAGTGCCG GATTTAAGAT TTCACGCTCA AAGCTAGTTG AGATGATAAG CAATGGTGAT GTGCGTGTCA ACTGGATCCC
TGTTACTACC AAAGGAAACA CACTGAAGAG TGGAGATATT GTATCAGTCA GTGGAAAGGG AAGATTAAAG ATAGGAGAAA
TAAACTCTAC AAAGAAAGGA AAATTTGCAG TGGAGCTCAT TCGGTATTTG TAGAAGTTCT GAAGACATTT CTGTAGGAAG
CTTTAGCCTC ATGTAAGTAA AACTGGAGAG AGGCAAAAGT TGTACAGAGT AATATTATTA TTCCCTCCAT TTCAAGATTA
TTGATGTTCA TCTTAAACCA AGAGCTGTGA TTTGTATCTG ATAGTGATCT TATTCAGTAA TATCAGCCCA AACGATTTCT
TGTTCTGAAT TGAGACCATT TAGCATAGAG AGATATGCCA TTTGCTGATA A

>Vigan.07G132700.01
ATGGCTGCAG CCACAAGCTT TGGAACTGCA TGTATTCTAA GAAGAGCAGC TCAGGCATTT GCAGTATCAC ATTCTCATAT
CATCAACAGC AATGCCACCT TCTCTTTTCA AAGGAAACTT TCCTCTCATA TTCTATCCGT TTCTACTAGT TCAGCTTCAG
GTGTAAGTCA AGCAGTTCAA GCTTTAAAGG GAGAAGTTGA CGTGCTAATC AAGGGAGTAG GAGAAAGAAA TGTAGCAAAA
GAAGTAAAAC ATATTCTTGA GATGGCTAGA CGAGCATCAT CGAAGCGGGA AACTCTCCAT ACAGATTTTC TAACACCTCC
AGTGCTAAAG GAATCTATGC AAATTTTGGA AAAATTAGCA GACGTGAAAG CAATTGCTCA AGGAGGTTAT CCTCAGGCTG
AACGCTGTCG GATATCAGTT GGACATCCAG AAGAACTGAC TAGTGATCCA GATGTTATTT CAGCATTAAG CATTAAAGGG
AACTTCCAGT TTGAACCTTG CTCACATGGT GACTTCCTTG GCTCAATTCT TGGTACAGGA ATTGTCAGGG AGAAACTTGG
GGATATTATA TTGCAGGGAG AACAGGGTGC GCAAATTATT GTTGTGCCAG AACTGGTTGA ATTTCTTATG TCAACCTTGG
TTAAGGTTCG TAATGTTCCT GTAACTTGCA CCAAGATACC ATTAATTTCT CTTGATTATG AACCACCAAG AACAAAATCA
TTCAAAACTA TAGAAGCATC GCTAAGAGTT GATGCACTTG CTAGTGCCGG ATTTAAGATT TCACGCTCAA AGCTAGTTGA
GATGATAAGC AATGGTGATG TGCGTGTCAA CTGGATCCCT GTTACTACCA AAGGAAACAC ACTGAAGAGT GGAGATATTG
TATCAGTCAG TGGAAAGGGA AGATTAAAGA TAGGAGAAAT AAACTCTACA AAGAAAGGAA AATTTGCAGT GGAGCTCATT
CGGTATTTGT AG

>Vigan.07G132700.01
MAAATSFGTA CILRRAAQAF AVSHSHIINS NATFSFQRKL SSHILSVSTS SASGVSQAVQ ALKGEVDVLI KGVGERNVAK
EVKHILEMAR RASSKRETLH TDFLTPPVLK ESMQILEKLA DVKAIAQGGY PQAERCRISV GHPEELTSDP DVISALSIKG
NFQFEPCSHG DFLGSILGTG IVREKLGDII LQGEQGAQII VVPELVEFLM STLVKVRNVP VTCTKIPLIS LDYEPPRTKS
FKTIEASLRV DALASAGFKI SRSKLVEMIS NGDVRVNWIP VTTKGNTLKS GDIVSVSGKG RLKIGEINST KKGKFAVELI
RYL*