GBrowse Details

Vigan.07G136900.01

Basic Information:
Name: Vigan.07G136900.01
Multiple alignment
Variant Information
Position: Chr07:15563948..15579734 (+ strand)
Length: 15787
Functional Information:
Description: Similar to Protein yippee-like. [I1M353, Glycine max]
InterPro: Yippee/Mis18 (IPR004910)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:158.57,70.49,18.68,32.14,18.47,21.24,21.42,22.51
Arabidopsis thaliana homolog: AT5G53940.1
Automatic updates:
Name: NM_001250984 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein yippee-like (LOC100306635), transcript variant 1, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Name: NM_001401221 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein yippee-like (LOC100306635), transcript variant 2, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Name: NM_001401222 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein yippee-like (LOC100306635), transcript variant 3, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:15563948..15564070 (+ strand)
Length: 123
Type: five_prime_UTR
Position: Chr07:15564071..15564166 (+ strand)
Length: 96
Type: CDS
Position: Chr07:15565390..15565433 (+ strand)
Length: 44
Type: CDS
Position: Chr07:15578447..15578555 (+ strand)
Length: 109
Type: CDS
Position: Chr07:15578857..15578912 (+ strand)
Length: 56
Type: CDS
Position: Chr07:15579309..15579393 (+ strand)
Length: 85
Type: CDS
Position: Chr07:15579394..15579734 (+ strand)
Length: 341
Type: three_prime_UTR


>Vigan.07G136900.01
GAAGAGCAAG TTTCCAGAGA AAGAGGCACT TGGATTGTCG TTTCTGTTCC CATGAACCGC TATGAGCAAT AGAAGCAAGT
GACGGTGGTG ACACAAGAAA ACAACAGAGA AAGCAGAAAG AATATGGGTA GATTCTTTGT GATGGAGCTT GAGGGAAGGT
CTTATAGATG CAAGTTTTGT AGTACTCACT TGGCCCTTGC AGATGATCTC ATTTCAAGGT CGTTTCATTG CCGGAGGGGA
AAAGCATACC TATTCAATAA CGTTGTCAAC TTCACACTCG GAGCACCAGA AGAAAGGATG ATGCTTTCAG GATTGCATAC
TGTGGCAGAT ATCTTTTGCT GTTGTTGTGG TCAAATAATT GGCTGGAAAT ACGAATCTGC ACACGAGAAG AGTCAAAAGT
ATAAAGAAGG GAAGTTTGTT CTTGAAAGAG GAAGGATAGT TGATGAAGTT GAGTTCTCTA CTGAATTCTA TATCGATAGT
CGTGTCTGCG TGAGTGATGG TGACGAGGCT TAAAAAGACA TGCTGCTGGA CTTGTTCTGT ATATGATGAA CAATAAAGGT
GACCCTTGGA AAAATGTTCA AGATCAGGGA AGTTTTTTTT GTTTTTTTTT TTAATTTATT TATTTGCGTG TGGTATATGA
AATGAGAGTT GCCAATGGTG TATGAATTGT GGAGAAAGAA AAAGATGAAA CATTGAAATG GTAGTTTTAG ATTTGCCGCA
AAATACTTGG AATGAACCTC TCATTATAGA CCTATTAAAA AATATTATAT TTTAGTAATG TACCTGTTTG AATTTTTCTC
TGAAGAAAAA GATTAGCATA ATGATTAAAA AGATAAGAAA CTAGATTATA AAAA

>Vigan.07G136900.01
ATGGGTAGAT TCTTTGTGAT GGAGCTTGAG GGAAGGTCTT ATAGATGCAA GTTTTGTAGT ACTCACTTGG CCCTTGCAGA
TGATCTCATT TCAAGGTCGT TTCATTGCCG GAGGGGAAAA GCATACCTAT TCAATAACGT TGTCAACTTC ACACTCGGAG
CACCAGAAGA AAGGATGATG CTTTCAGGAT TGCATACTGT GGCAGATATC TTTTGCTGTT GTTGTGGTCA AATAATTGGC
TGGAAATACG AATCTGCACA CGAGAAGAGT CAAAAGTATA AAGAAGGGAA GTTTGTTCTT GAAAGAGGAA GGATAGTTGA
TGAAGTTGAG TTCTCTACTG AATTCTATAT CGATAGTCGT GTCTGCGTGA GTGATGGTGA CGAGGCTTAA 

>Vigan.07G136900.01
MGRFFVMELE GRSYRCKFCS THLALADDLI SRSFHCRRGK AYLFNNVVNF TLGAPEERMM LSGLHTVADI FCCCCGQIIG
WKYESAHEKS QKYKEGKFVL ERGRIVDEVE FSTEFYIDSR VCVSDGDEA*